[HTML][HTML] Max point-tolerance graphs

D Catanzaro, S Chaplick, S Felsner… - Discrete Applied …, 2017 - Elsevier
A graph G is a max point-tolerance (MPT) graph if each vertex v of G can be mapped to a
pointed-interval (I v, pv) where I v is an interval of R and pv∈ I v such that uv is an edge of G …

Grid intersection graphs and order dimension

S Chaplick, S Felsner, U Hoffmann, V Wiechert - Order, 2018 - Springer
We study subclasses of grid intersection graphs from the perspective of order dimension. We
show that partial orders of height two whose comparability graph is a grid intersection graph …

HapFABIA: identification of very short segments of identity by descent characterized by rare variants in large sequencing data

S Hochreiter - Nucleic acids research, 2013 - academic.oup.com
Identity by descent (IBD) can be reliably detected for long shared DNA segments, which are
found in related individuals. However, many studies contain cohorts of unrelated individuals …

On the complexity of recognizing Stick, BipHook and Max Point-Tolerance graphs

I Rusu - Theoretical Computer Science, 2023 - Elsevier
Stick graphs are defined as follows. Let A (respectively B) be a set of vertical (respectively
horizontal) segments in the plane such that the bottom endpoints of the segments in A and …

Identical by Descent (IBD): Investigation of the Genetic Ties between Africans, Denisovans, and Neandertals

T Fadziso, M Manavalan - Asian Journal of Humanity, Art and …, 2017 - i-proclaim.my
Interbreeding between human ancestors and other hominins has been extensively studied
outside of Africa, but their shared history within Africa has received less study. However …

[图书][B] Intersection graphs and geometric objects in the plane

U Hoffmann - 2016 - search.proquest.com
In this thesis, we consider several aspects of representations of graphs in the plane. We
consider mainly intersection and visibility representations of graphs. In both kind of …

Sharing of very short IBD segments between humans, neandertals, and denisovans

G Povysil, S Hochreiter - bioRxiv, 2014 - biorxiv.org
We analyze the sharing of very short identity by descent (IBD) segments between humans,
Neandertals, and Denisovans to gain new insights into their demographic history. Short IBD …

Forced pairs in A-Stick graphs

I Rusu - Discrete Mathematics, 2022 - Elsevier
Abstract A Stick graph G=(A∪ B, E) is the intersection graph of a set A of horizontal
segments and a set B of vertical segments in the plane, whose left and respectively bottom …

Stick graphs with length constraints

S Chaplick, P Kindermann, A Löffler, F Thiele… - … Symposium on Graph …, 2019 - Springer
Stick graphs are intersection graphs of horizontal and vertical line segments that all touch a
line of slope-1 and lie above this line. De Luca et al. GD'18 considered the recognition …

An integer programming formulation of the parsimonious loss of heterozygosity problem

D Catanzaro, M Labbé… - IEEE/ACM transactions …, 2012 - ieeexplore.ieee.org
A loss of heterozygosity (LOH) event occurs when, by the laws of Mendelian inheritance, an
individual should be heterozygote at a given site but, due to a deletion polymorphism, is not …