Schrödinger's microbes: tools for distinguishing the living from the dead in microbial ecosystems

JB Emerson, RI Adams, CMB Román, B Brooks… - Microbiome, 2017 - Springer
While often obvious for macroscopic organisms, determining whether a microbe is dead or
alive is fraught with complications. Fields such as microbial ecology, environmental health …

Antibiotic microbial resistance (AMR) removal efficiencies by conventional and advanced wastewater treatment processes: A review

CX Hiller, U Hübner, S Fajnorova, T Schwartz… - Science of the Total …, 2019 - Elsevier
Abstract The World Health Organization (WHO) has identified the spread of antibiotic
resistance as one of the major risks to global public health. An important transfer route into …

Relic DNA is abundant in soil and obscures estimates of soil microbial diversity

P Carini, PJ Marsden, JW Leff, EE Morgan… - Nature …, 2016 - nature.com
Extracellular DNA from dead microorganisms can persist in soil for weeks to years 1–3.
Although it is implicitly assumed that the microbial DNA recovered from soil predominantly …

Dead or alive: molecular assessment of microbial viability

GA Cangelosi, JS Meschke - Applied and environmental …, 2014 - Am Soc Microbiol
Nucleic acid-based analytical methods, ranging from species-targeted PCRs to
metagenomics, have greatly expanded our understanding of microbiological diversity in …

The lung mycobiome: an emerging field of the human respiratory microbiome

LDN Nguyen, E Viscogliosi, L Delhaes - Frontiers in microbiology, 2015 - frontiersin.org
The lung microbiome, which is believed to be stable or at least transient in healthy people, is
now considered as a poly-microorganism component contributing to disease pathogenesis …

Microbiomes of the dust particles collected from the International Space Station and Spacecraft Assembly Facilities

A Checinska, AJ Probst, P Vaishampayan, JR White… - Microbiome, 2015 - Springer
Abstract Background The International Space Station (ISS) is a unique built environment
due to the effects of microgravity, space radiation, elevated carbon dioxide levels, and …

Comparison of DNA-, PMA-, and RNA-based 16S rRNA Illumina sequencing for detection of live bacteria in water

R Li, HM Tun, M Jahan, Z Zhang, A Kumar… - Scientific reports, 2017 - nature.com
The limitation of 16S rRNA gene sequencing (DNA-based) for microbial community
analyses in water is the inability to differentiate live (dormant cells as well as growing or non …

Assessment of bacterial viability: a comprehensive review on recent advances and challenges

SS Kumar, AR Ghosh - Microbiology, 2019 - microbiologyresearch.org
Assessing bacterial contamination in environmental samples is critical in determining threats
to public health. The classical methods are time-consuming and only recognize species that …

Two decades of describing the unseen majority of aquatic microbial diversity

L Zinger, A Gobet, T Pommier - Molecular ecology, 2012 - Wiley Online Library
Aquatic environments harbour large and diverse microbial populations that ensure their
functioning and sustainability. In the current context of global change, characterizing …

Exploring preterm birth as a polymicrobial disease: an overview of the uterine microbiome

MS Payne, S Bayatibojakhi - Frontiers in immunology, 2014 - frontiersin.org
Infection is a leading cause of preterm birth (PTB). A focus of many studies over the past
decade has been to characterize microorganisms present in the uterine cavity and …