Mapping epigenetic modifications by sequencing technologies
X Chen, H Xu, X Shu, CX Song - Cell Death & Differentiation, 2023 - nature.com
The “epigenetics” concept was first described in 1942. Thus far, chemical modifications on
histones, DNA, and RNA have emerged as three important building blocks of epigenetic …
histones, DNA, and RNA have emerged as three important building blocks of epigenetic …
Nanopore DNA sequencing technologies and their applications towards single-molecule proteomics
Sequencing of nucleic acids with nanopores has emerged as a powerful tool offering rapid
readout, high accuracy, low cost and portability. This label-free method for sequencing at the …
readout, high accuracy, low cost and portability. This label-free method for sequencing at the …
Joint single-cell profiling resolves 5mC and 5hmC and reveals their distinct gene regulatory effects
Abstract Oxidative modification of 5-methylcytosine (5mC) by ten-eleven translocation (TET)
DNA dioxygenases generates 5-hydroxymethylcytosine (5hmC), the most abundant form of …
DNA dioxygenases generates 5-hydroxymethylcytosine (5hmC), the most abundant form of …
TET Enzymes in the Immune system: from DNA demethylation to immunotherapy, inflammation, and cancer
IF López-Moyado, M Ko, PG Hogan… - Annual Review of …, 2024 - annualreviews.org
Ten-eleven translocation (TET) proteins are iron-dependent and α-ketoglutarate-dependent
dioxygenases that sequentially oxidize the methyl group of 5-methylcytosine (5mC) to 5 …
dioxygenases that sequentially oxidize the methyl group of 5-methylcytosine (5mC) to 5 …
Single-cell bisulfite-free 5mC and 5hmC sequencing with high sensitivity and scalability
Existing single-cell bisulfite-based DNA methylation analysis is limited by low DNA recovery,
and the measurement of 5hmC at single-base resolution remains challenging. Here, we …
and the measurement of 5hmC at single-base resolution remains challenging. Here, we …
Epigenomic heterogeneity as a source of tumour evolution
In the past decade, remarkable progress in cancer medicine has been achieved by the
development of treatments that target DNA sequence variants. However, a purely genetic …
development of treatments that target DNA sequence variants. However, a purely genetic …
Simultaneous single-cell analysis of 5mC and 5hmC with SIMPLE-seq
Abstract Dynamic 5-methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC)
modifications to DNA regulate gene expression in a cell-type-specific manner and are …
modifications to DNA regulate gene expression in a cell-type-specific manner and are …
BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies
Data from both bulk and single-cell whole-genome DNA methylation experiments are under-
utilized in many ways. This is attributable to inefficient mapping of methylation sequencing …
utilized in many ways. This is attributable to inefficient mapping of methylation sequencing …
Population epigenetics: DNA methylation in the plant omics era
J Liu, X Zhong - Plant Physiology, 2024 - academic.oup.com
DNA methylation plays an important role in many biological processes. The mechanisms
underlying the establishment and maintenance of DNA methylation are well understood …
underlying the establishment and maintenance of DNA methylation are well understood …
5-Hydroxymethylcytosine: The many faces of the sixth base of mammalian DNA
E Kriukienė, M Tomkuvienė… - Chemical Society …, 2024 - pubs.rsc.org
Epigenetic phenomena play a central role in cell regulatory processes and are important
factors for understanding complex human disease. One of the best understood epigenetic …
factors for understanding complex human disease. One of the best understood epigenetic …