Morphology should not be forgotten in the era of genomics–a phylogenetic perspective

G Giribet - Zoologischer Anzeiger-A Journal of Comparative …, 2015 - Elsevier
Morphology has traditionally played a pivotal role in animal phylogeny since the first
evolutionary biologists began to decipher the animal tree of life. In recent times, however …

The changing face of the molecular evolutionary clock

SYW Ho - Trends in Ecology & Evolution, 2014 - cell.com
The molecular clock has played an important role in biological research, both as a
description of the evolutionary process and as a tool for inferring evolutionary timescales …

Phylogenomic interrogation of Arachnida reveals systemic conflicts in phylogenetic signal

PP Sharma, ST Kaluziak… - Molecular biology …, 2014 - academic.oup.com
Chelicerata represents one of the oldest groups of arthropods, with a fossil record extending
to the Cambrian, and is sister group to the remaining extant arthropods, the mandibulates …

Optimizing de novo assembly of short-read RNA-seq data for phylogenomics

Y Yang, SA Smith - BMC genomics, 2013 - Springer
Background RNA-seq has shown huge potential for phylogenomic inferences in non-model
organisms. However, error, incompleteness, and redundant assembled transcripts for each …

Phylogenomics resolves evolutionary relationships among ants, bees, and wasps

BR Johnson, ML Borowiec, JC Chiu, EK Lee, J Atallah… - Current Biology, 2013 - cell.com
Eusocial behavior has arisen in few animal groups, most notably in the aculeate
Hymenoptera, a clade comprising ants, bees, and stinging wasps [1–4]. Phylogeny is crucial …

High phylogenetic utility of an ultraconserved element probe set designed for Arachnida

J Starrett, S Derkarabetian, M Hedin… - Molecular ecology …, 2017 - Wiley Online Library
Arachnida is an ancient, diverse and ecologically important animal group that contains a
number of species of interest for medical, agricultural and engineering applications. Despite …

An Opiliones-specific ultraconserved element probe set with a near-complete family-level phylogeny

S Derkarabetian, A Lord, K Angier, E Frigyik… - Molecular Phylogenetics …, 2023 - Elsevier
Sequence capture of ultraconserved elements (UCEs) has transformed molecular
systematics across many taxa, with arachnids being no exception. The probe set available …

Phylogenomic interrogation resolves the backbone of the Pseudoscorpiones tree of life

LR Benavides, JG Cosgrove, MS Harvey… - Molecular phylogenetics …, 2019 - Elsevier
Pseudoscorpiones, with nearly 3700 described species, are an ancient and globally
distributed group of arachnids with a fossil record dating back to the Middle Devonian …

Phylogenomic resolution of scorpions reveals multilevel discordance with morphological phylogenetic signal

PP Sharma, R Fernández… - … of the Royal …, 2015 - royalsocietypublishing.org
Scorpions represent an iconic lineage of arthropods, historically renowned for their unique
bauplan, ancient fossil record and venom potency. Yet, higher level relationships of …

Comparative description of ten transcriptomes of newly sequenced invertebrates and efficiency estimation of genomic sampling in non-model taxa

A Riesgo, SCS Andrade, PP Sharma, M Novo… - Frontiers in …, 2012 - Springer
Introduction Traditionally, genomic or transcriptomic data have been restricted to a few
model or emerging model organisms, and to a handful of species of medical and/or …