Designing future crops: genomics-assisted breeding comes of age

RK Varshney, A Bohra, J Yu, A Graner, Q Zhang… - Trends in Plant …, 2021 - cell.com
Over the past decade, genomics-assisted breeding (GAB) has been instrumental in
harnessing the potential of modern genome resources and characterizing and exploiting …

Genomic resources in plant breeding for sustainable agriculture

M Thudi, R Palakurthi, JC Schnable… - Journal of Plant …, 2021 - Elsevier
Climate change during the last 40 years has had a serious impact on agriculture and
threatens global food and nutritional security. From over half a million plant species, cereals …

Triticum population sequencing provides insights into wheat adaptation

Y Zhou, X Zhao, Y Li, J Xu, A Bi, L Kang, D Xu… - Nature …, 2020 - nature.com
Bread wheat expanded its habitat from a core area of the Fertile Crescent to global
environments within~ 10,000 years. The genetic mechanisms of this remarkable …

Genome-wide dissection of changes in maize root system architecture during modern breeding

W Ren, L Zhao, J Liang, L Wang, L Chen, P Li, Z Liu… - Nature Plants, 2022 - nature.com
Appropriate root system architecture (RSA) can improve maize yields in densely planted
fields, but little is known about its genetic basis in maize. Here we performed root …

Open access resources for genome-wide association mapping in rice

SR McCouch, MH Wright, CW Tung, LG Maron… - Nature …, 2016 - nature.com
Increasing food production is essential to meet the demands of a growing human
population, with its rising income levels and nutritional expectations. To address the …

Crop breeding chips and genotyping platforms: progress, challenges, and perspectives

A Rasheed, Y Hao, X Xia, A Khan, Y Xu, RK Varshney… - Molecular plant, 2017 - cell.com
There is a rapidly rising trend in the development and application of molecular marker
assays for gene mapping and discovery in field crops and trees. Thus far, more than 50 SNP …

Construction of the third-generation Zea mays haplotype map

R Bukowski, X Guo, Y Lu, C Zou, B He, Z Rong… - …, 2018 - academic.oup.com
Background Characterization of genetic variations in maize has been challenging, mainly
due to deterioration of collinearity between individual genomes in the species. An …

Bulked sample analysis in genetics, genomics and crop improvement

C Zou, P Wang, Y Xu - Plant biotechnology journal, 2016 - Wiley Online Library
Biological assay has been based on analysis of all individuals collected from sample
populations. Bulked sample analysis (BSA), which works with selected and pooled …

Towards a whole‐genome sequence for rye (Secale cereale L.)

E Bauer, T Schmutzer, I Barilar, M Mascher… - The Plant …, 2017 - Wiley Online Library
We report on a whole‐genome draft sequence of rye (Secale cereale L.). Rye is a diploid
Triticeae species closely related to wheat and barley, and an important crop for food and …

European maize genomes highlight intraspecies variation in repeat and gene content

G Haberer, N Kamal, E Bauer, H Gundlach, I Fischer… - Nature Genetics, 2020 - nature.com
The diversity of maize (Zea mays) is the backbone of modern heterotic patterns and hybrid
breeding. Historically, US farmers exploited this variability to establish today's highly …