[HTML][HTML] Metagenomic data assembly–the way of decoding unknown microorganisms
AL Lapidus, AI Korobeynikov - Frontiers in Microbiology, 2021 - frontiersin.org
Metagenomics is a segment of conventional microbial genomics dedicated to the
sequencing and analysis of combined genomic DNA of entire environmental samples. The …
sequencing and analysis of combined genomic DNA of entire environmental samples. The …
New approaches for metagenome assembly with short reads
M Ayling, MD Clark, RM Leggett - Briefings in bioinformatics, 2020 - academic.oup.com
In recent years, the use of longer range read data combined with advances in assembly
algorithms has stimulated big improvements in the contiguity and quality of genome …
algorithms has stimulated big improvements in the contiguity and quality of genome …
[HTML][HTML] Bacteriophage targeting microbiota alleviates non-alcoholic fatty liver disease induced by high alcohol-producing Klebsiella pneumoniae
L Gan, Y Feng, B Du, H Fu, Z Tian, G Xue… - Nature …, 2023 - nature.com
Our previous studies have shown that high alcohol-producing Klebsiella pneumoniae (HiAlc
Kpn) in the intestinal microbiome could be one of the causes of non-alcoholic fatty liver …
Kpn) in the intestinal microbiome could be one of the causes of non-alcoholic fatty liver …
Healthy human gut phageome
The role of bacteriophages in influencing the structure and function of the healthy human gut
microbiome is unknown. With few exceptions, previous studies have found a high level of …
microbiome is unknown. With few exceptions, previous studies have found a high level of …
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing
Long-read, single-molecule real-time (SMRT) sequencing is routinely used to finish
microbial genomes, but available assembly methods have not scaled well to larger …
microbial genomes, but available assembly methods have not scaled well to larger …
[HTML][HTML] Extremely high mutation rate of HIV-1 in vivo
Rates of spontaneous mutation critically determine the genetic diversity and evolution of
RNA viruses. Although these rates have been characterized in vitro and in cell culture …
RNA viruses. Although these rates have been characterized in vitro and in cell culture …
SARS‐CoV‐2 spike mRNA vaccine sequences circulate in blood up to 28 days after COVID‐19 vaccination
JAS Castruita, UV Schneider, S Mollerup… - Apmis, 2023 - Wiley Online Library
In Denmark, vaccination against Severe Acute Respiratory Syndrome Corona Virus 2 (SARS‐
CoV‐2) has been with the Pfizer‐BioNTech (BTN162b2) or the Moderna (mRNA‐1273) …
CoV‐2) has been with the Pfizer‐BioNTech (BTN162b2) or the Moderna (mRNA‐1273) …
[HTML][HTML] An introduction to next generation sequencing bioinformatic analysis in gut microbiome studies
The gut microbiome is a microbial ecosystem which expresses 100 times more genes than
the human host and plays an essential role in human health and disease pathogenesis …
the human host and plays an essential role in human health and disease pathogenesis …
Characterization of a novel orthomyxo-like virus causing mass die-offs of tilapia
Tilapia are an important global food source due to their omnivorous diet, tolerance for high-
density aquaculture, and relative disease resistance. Since 2009, tilapia aquaculture has …
density aquaculture, and relative disease resistance. Since 2009, tilapia aquaculture has …
Elevated virulence of an emerging viral genotype as a driver of honeybee loss
DP McMahon, ME Natsopoulou… - … of the Royal …, 2016 - royalsocietypublishing.org
Emerging infectious diseases (EIDs) have contributed significantly to the current biodiversity
crisis, leading to widespread epidemics and population loss. Owing to genetic variation in …
crisis, leading to widespread epidemics and population loss. Owing to genetic variation in …