Epigenome plasticity in plants

JPB Lloyd, R Lister - Nature Reviews Genetics, 2022 - nature.com
Plant intra-individual and inter-individual variation can be determined by the epigenome, a
set of covalent modifications of DNA and chromatin that can alter genome structure and …

[HTML][HTML] Transgenerational epigenetic inheritance: myths and mechanisms

E Heard, RA Martienssen - Cell, 2014 - cell.com
Since the human genome was sequenced, the term" epigenetics" is increasingly being
associated with the hope that we are more than just the sum of our genes. Might what we …

[HTML][HTML] High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development

N Daccord, JM Celton, G Linsmith, C Becker… - Nature …, 2017 - nature.com
Using the latest sequencing and optical mapping technologies, we have produced a high-
quality de novo assembly of the apple (Malus domestica Borkh.) genome. Repeat …

[HTML][HTML] Epigenomic diversity in a global collection of Arabidopsis thaliana accessions

T Kawakatsu, SC Huang, F Jupe, E Sasaki, RJ Schmitz… - Cell, 2016 - cell.com
The epigenome orchestrates genome accessibility, functionality, and three-dimensional
structure. Because epigenetic variation can impact transcription and thus phenotypes, it may …

RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

MA Matzke, RA Mosher - Nature Reviews Genetics, 2014 - nature.com
RNA-directed DNA methylation (RdDM) is the major small RNA-mediated epigenetic
pathway in plants. RdDM requires a specialized transcriptional machinery that comprises …

[HTML][HTML] Widespread natural variation of DNA methylation within angiosperms

CE Niederhuth, AJ Bewick, L Ji, MS Alabady, KD Kim… - Genome biology, 2016 - Springer
Background DNA methylation is an important feature of plant epigenomes, involved in the
formation of heterochromatin and affecting gene expression. Extensive variation of DNA …

Reconsidering plant memory: Intersections between stress recovery, RNA turnover, and epigenetics

PA Crisp, D Ganguly, SR Eichten, JO Borevitz… - Science …, 2016 - science.org
Plants grow in dynamic environments where they can be exposed to a multitude of stressful
factors, all of which affect their development, yield, and, ultimately, reproductive success …

The epigenome and transcriptional dynamics of fruit ripening

J Giovannoni, C Nguyen, B Ampofo… - Annual Review of …, 2017 - annualreviews.org
Fruit has evolved myriad forms that facilitate seed dispersal in varied environmental and
ecological contexts. Because fleshy fruits become attractive and nutritious to seed …

Widespread dynamic DNA methylation in response to biotic stress

RH Dowen, M Pelizzola, RJ Schmitz… - Proceedings of the …, 2012 - National Acad Sciences
Regulation of gene expression by DNA methylation is crucial for defining cellular identities
and coordinating organism-wide developmental programs in many organisms. In plants …

Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening

S Zhong, Z Fei, YR Chen, Y Zheng, M Huang… - Nature …, 2013 - nature.com
Ripening of tomato fruits is triggered by the plant hormone ethylene, but its effect is restricted
by an unknown developmental cue to mature fruits containing viable seeds. To determine …