Evolutionary pathways and trajectories in antibiotic resistance
Evolution is the hallmark of life. Descriptions of the evolution of microorganisms have
provided a wealth of information, but knowledge regarding “what happened” has precluded …
provided a wealth of information, but knowledge regarding “what happened” has precluded …
[HTML][HTML] Intrinsic dynamics is evolutionarily optimized to enable allosteric behavior
Highlights•The intrinsic dynamics, encoded in proteins' sequences and structures, are
utilized by stimuli to trigger allosteric and functional actions.•The modes of allosteric actions …
utilized by stimuli to trigger allosteric and functional actions.•The modes of allosteric actions …
Allosteric drugs and mutations: chances, challenges, and necessity
E Guarnera, IN Berezovsky - Current opinion in structural biology, 2020 - Elsevier
Highlights•Allosteric drugs have become an indispensable tool in precision medicine.•Major
targets for allosteric drugs: diversity structures and functions.•Allosteric effects of mutations …
targets for allosteric drugs: diversity structures and functions.•Allosteric effects of mutations …
NQO1: A target for the treatment of cancer and neurological diseases, and a model to understand loss of function disease mechanisms
SK Beaver, N Mesa-Torres, AL Pey… - Biochimica et Biophysica …, 2019 - Elsevier
Abstract NAD (P) H quinone oxidoreductase 1 (NQO1) is a multi-functional protein that
catalyses the reduction of quinones (and other molecules), thus playing roles in xenobiotic …
catalyses the reduction of quinones (and other molecules), thus playing roles in xenobiotic …
On the perturbation nature of allostery: sites, mutations, and signal modulation
E Guarnera, IN Berezovsky - Current opinion in structural biology, 2019 - Elsevier
Regardless of the diversity of systems, allosteic signalling is found to be always caused by
perturbations. This recurring trait of allostery serves as a foundation for developing different …
perturbations. This recurring trait of allostery serves as a foundation for developing different …
Influence of disease-causing mutations on protein structural networks
VM Prabantu, N Naveenkumar… - Frontiers in Molecular …, 2021 - frontiersin.org
The interactions between residues in a protein tertiary structure can be studied effectively
using the approach of protein structure network (PSN). A PSN is a node-edge representation …
using the approach of protein structure network (PSN). A PSN is a node-edge representation …
[HTML][HTML] Alterations of the interactome of Bcl-2 proteins in breast cancer at the transcriptional, mutational and structural level
SM Kønig, V Rissler, T Terkelsen… - PLoS computational …, 2019 - journals.plos.org
Apoptosis is an essential defensive mechanism against tumorigenesis. Proteins of the B-cell
lymphoma-2 (Bcl-2) family regulate programmed cell death by the mitochondrial apoptosis …
lymphoma-2 (Bcl-2) family regulate programmed cell death by the mitochondrial apoptosis …
The molecular biology of tubulinopathies: Understanding the impact of variants on tubulin structure and microtubule regulation
KJ Hoff, AJ Neumann, JK Moore - Frontiers in cellular neuroscience, 2022 - frontiersin.org
Heterozygous, missense mutations in both α-and β-tubulin genes have been linked to an
array of neurodevelopment disorders, commonly referred to as “tubulinopathies.” To date …
array of neurodevelopment disorders, commonly referred to as “tubulinopathies.” To date …
Rational engineering of enzymes for enhanced cold activity
W Wang, J Swartz - ACS Catalysis, 2024 - ACS Publications
Temperature-dependent evolution of enzymes allowed for biological adaptation to the wide
range of temperatures found across Earth's ecological niches. Adaptation of enzyme activity …
range of temperatures found across Earth's ecological niches. Adaptation of enzyme activity …
Thermodynamic architecture and conformational plasticity of GPCRs
S Anantakrishnan, AN Naganathan - Nature Communications, 2023 - nature.com
G-protein-coupled receptors (GPCRs) are ubiquitous integral membrane proteins involved
in diverse cellular signaling processes. Here, we carry out a large-scale ensemble …
in diverse cellular signaling processes. Here, we carry out a large-scale ensemble …