Evolutionary pathways and trajectories in antibiotic resistance

F Baquero, JL Martinez, V F. Lanza… - Clinical Microbiology …, 2021 - Am Soc Microbiol
Evolution is the hallmark of life. Descriptions of the evolution of microorganisms have
provided a wealth of information, but knowledge regarding “what happened” has precluded …

[HTML][HTML] Intrinsic dynamics is evolutionarily optimized to enable allosteric behavior

Y Zhang, P Doruker, B Kaynak, S Zhang… - Current opinion in …, 2020 - Elsevier
Highlights•The intrinsic dynamics, encoded in proteins' sequences and structures, are
utilized by stimuli to trigger allosteric and functional actions.•The modes of allosteric actions …

Allosteric drugs and mutations: chances, challenges, and necessity

E Guarnera, IN Berezovsky - Current opinion in structural biology, 2020 - Elsevier
Highlights•Allosteric drugs have become an indispensable tool in precision medicine.•Major
targets for allosteric drugs: diversity structures and functions.•Allosteric effects of mutations …

NQO1: A target for the treatment of cancer and neurological diseases, and a model to understand loss of function disease mechanisms

SK Beaver, N Mesa-Torres, AL Pey… - Biochimica et Biophysica …, 2019 - Elsevier
Abstract NAD (P) H quinone oxidoreductase 1 (NQO1) is a multi-functional protein that
catalyses the reduction of quinones (and other molecules), thus playing roles in xenobiotic …

On the perturbation nature of allostery: sites, mutations, and signal modulation

E Guarnera, IN Berezovsky - Current opinion in structural biology, 2019 - Elsevier
Regardless of the diversity of systems, allosteic signalling is found to be always caused by
perturbations. This recurring trait of allostery serves as a foundation for developing different …

Influence of disease-causing mutations on protein structural networks

VM Prabantu, N Naveenkumar… - Frontiers in Molecular …, 2021 - frontiersin.org
The interactions between residues in a protein tertiary structure can be studied effectively
using the approach of protein structure network (PSN). A PSN is a node-edge representation …

[HTML][HTML] Alterations of the interactome of Bcl-2 proteins in breast cancer at the transcriptional, mutational and structural level

SM Kønig, V Rissler, T Terkelsen… - PLoS computational …, 2019 - journals.plos.org
Apoptosis is an essential defensive mechanism against tumorigenesis. Proteins of the B-cell
lymphoma-2 (Bcl-2) family regulate programmed cell death by the mitochondrial apoptosis …

The molecular biology of tubulinopathies: Understanding the impact of variants on tubulin structure and microtubule regulation

KJ Hoff, AJ Neumann, JK Moore - Frontiers in cellular neuroscience, 2022 - frontiersin.org
Heterozygous, missense mutations in both α-and β-tubulin genes have been linked to an
array of neurodevelopment disorders, commonly referred to as “tubulinopathies.” To date …

Rational engineering of enzymes for enhanced cold activity

W Wang, J Swartz - ACS Catalysis, 2024 - ACS Publications
Temperature-dependent evolution of enzymes allowed for biological adaptation to the wide
range of temperatures found across Earth's ecological niches. Adaptation of enzyme activity …

Thermodynamic architecture and conformational plasticity of GPCRs

S Anantakrishnan, AN Naganathan - Nature Communications, 2023 - nature.com
G-protein-coupled receptors (GPCRs) are ubiquitous integral membrane proteins involved
in diverse cellular signaling processes. Here, we carry out a large-scale ensemble …