Coupling of RNA polymerase II transcription elongation with pre-mRNA splicing

T Saldi, MA Cortazar, RM Sheridan… - Journal of molecular …, 2016 - Elsevier
Pre-mRNA maturation frequently occurs at the same time and place as transcription by RNA
polymerase II. The co-transcriptionality of mRNA processing has permitted the evolution of …

Transcription through the nucleosome

T Kujirai, H Kurumizaka - Current Opinion in Structural Biology, 2020 - Elsevier
Highlights•Dynamic changes in the nucleosome structure take place when RNA polymerase
II transcribes through a nucleosome.•Nucleosome reassembly may be mediated by the …

Structural basis of nucleosome disassembly and reassembly by RNAPII elongation complex with FACT

H Ehara, T Kujirai, M Shirouzu, H Kurumizaka… - Science, 2022 - science.org
During gene transcription, RNA polymerase II (RNAPII) traverses nucleosomes in chromatin,
but the mechanism has remained elusive. Using cryo–electron microscopy, we obtained …

[HTML][HTML] Structure of a backtracked hexasomal intermediate of nucleosome transcription

L Farnung, M Ochmann, G Garg, SM Vos, P Cramer - Molecular Cell, 2022 - cell.com
During gene transcription, RNA polymerase II (RNA Pol II) passes nucleosomes with the
help of various elongation factors. Here, we show that RNA Pol II achieves efficient …

Histone dynamics mediate DNA unwrapping and sliding in nucleosomes

GA Armeev, AS Kniazeva, GA Komarova… - Nature …, 2021 - nature.com
Nucleosomes are elementary building blocks of chromatin in eukaryotes. They tightly
wrap∼ 147 DNA base pairs around an octamer of histone proteins. How nucleosome …

Spatial organization of transcribed eukaryotic genes

S Leidescher, J Ribisel, S Ullrich, Y Feodorova… - Nature cell …, 2022 - nature.com
Despite the well-established role of nuclear organization in the regulation of gene
expression, little is known about the reverse: how transcription shapes the spatial …

Old cogs, new tricks: the evolution of gene expression in a chromatin context

PB Talbert, MP Meers, S Henikoff - Nature Reviews Genetics, 2019 - nature.com
Sophisticated gene-regulatory mechanisms probably evolved in prokaryotes billions of
years before the emergence of modern eukaryotes, which inherited the same basic …

Structural perspectives on transcription in chromatin

S Sekine, H Ehara, T Kujirai, H Kurumizaka - Trends in Cell Biology, 2024 - cell.com
In eukaryotes, all genetic processes take place in the cell nucleus, where DNA is packaged
as chromatin in'beads-on-a-string'nucleosome arrays. RNA polymerase II (RNAPII) …

Large-scale ATP-independent nucleosome unfolding by a histone chaperone

ME Valieva, GA Armeev, KS Kudryashova… - Nature structural & …, 2016 - nature.com
DNA accessibility to regulatory proteins is substantially influenced by nucleosome structure
and dynamics. The facilitates chromatin transcription (FACT) complex increases the …

Mechanisms of transcription elongation factor DSIF (Spt4–Spt5)

TM Decker - Journal of molecular biology, 2021 - Elsevier
The transcription elongation factor Spt5 is conserved from bacteria to humans. In
eukaryotes, Spt5 forms a complex with Spt4 and regulates processive transcription …