A field guide to eukaryotic transposable elements
JN Wells, C Feschotte - Annual review of genetics, 2020 - annualreviews.org
Transposable elements (TEs) are mobile DNA sequences that propagate within genomes.
Through diverse invasion strategies, TEs have come to occupy a substantial fraction of …
Through diverse invasion strategies, TEs have come to occupy a substantial fraction of …
Ten things you should know about transposable elements
Transposable elements (TEs) are major components of eukaryotic genomes. However, the
extent of their impact on genome evolution, function, and disease remain a matter of intense …
extent of their impact on genome evolution, function, and disease remain a matter of intense …
Regulatory activities of transposable elements: from conflicts to benefits
Transposable elements (TEs) are a prolific source of tightly regulated, biochemically active
non-coding elements, such as transcription factor-binding sites and non-coding RNAs. Many …
non-coding elements, such as transcription factor-binding sites and non-coding RNAs. Many …
Transposase-assisted target-site integration for efficient plant genome engineering
The current technologies to place new DNA into specific locations in plant genomes are low
frequency and error-prone, and this inefficiency hampers genome-editing approaches to …
frequency and error-prone, and this inefficiency hampers genome-editing approaches to …
How important are transposons for plant evolution?
D Lisch - Nature Reviews Genetics, 2013 - nature.com
For decades, transposable elements have been known to produce a wide variety of changes
in plant gene expression and function. This has led to the idea that transposable element …
in plant gene expression and function. This has led to the idea that transposable element …
The molecular biology of meiosis in plants
R Mercier, C Mézard, E Jenczewski… - Annual review of …, 2015 - annualreviews.org
Meiosis is the cell division that reshuffles genetic information between generations.
Recently, much progress has been made in understanding this process; in particular, the …
Recently, much progress has been made in understanding this process; in particular, the …
[PDF][PDF] Gene body methylation in plants: mechanisms, functions, and important implications for understanding evolutionary processes
Gene body methylation (gbM) is an epigenetic mark where gene exons are methylated in
the CG context only, as opposed to CHG and CHH contexts (where H stands for A, C, or T) …
the CG context only, as opposed to CHG and CHH contexts (where H stands for A, C, or T) …
Transposable elements, epigenetics, and genome evolution
NV Fedoroff - Science, 2012 - science.org
2012 still-prevalent view that every bit of an organism's DNA has a specific function crafted
by selection. Thus, both papers promoted Dawkins' concept of “selfish DNA”—the notion that …
by selection. Thus, both papers promoted Dawkins' concept of “selfish DNA”—the notion that …
The contributions of transposable elements to the structure, function, and evolution of plant genomes
JL Bennetzen, H Wang - Annual review of plant biology, 2014 - annualreviews.org
Transposable elements (TEs) are the key players in generating genomic novelty by a
combination of the chromosome rearrangements they cause and the genes that come under …
combination of the chromosome rearrangements they cause and the genes that come under …
FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads
H Xu, X Luo, J Qian, X Pang, J Song, G Qian, J Chen… - PloS one, 2012 - journals.plos.org
The presence of duplicates introduced by PCR amplification is a major issue in paired short
reads from next-generation sequencing platforms. These duplicates might have a serious …
reads from next-generation sequencing platforms. These duplicates might have a serious …