A field guide to eukaryotic transposable elements

JN Wells, C Feschotte - Annual review of genetics, 2020 - annualreviews.org
Transposable elements (TEs) are mobile DNA sequences that propagate within genomes.
Through diverse invasion strategies, TEs have come to occupy a substantial fraction of …

Ten things you should know about transposable elements

G Bourque, KH Burns, M Gehring, V Gorbunova… - Genome biology, 2018 - Springer
Transposable elements (TEs) are major components of eukaryotic genomes. However, the
extent of their impact on genome evolution, function, and disease remain a matter of intense …

Regulatory activities of transposable elements: from conflicts to benefits

EB Chuong, NC Elde, C Feschotte - Nature Reviews Genetics, 2017 - nature.com
Transposable elements (TEs) are a prolific source of tightly regulated, biochemically active
non-coding elements, such as transcription factor-binding sites and non-coding RNAs. Many …

Transposase-assisted target-site integration for efficient plant genome engineering

P Liu, K Panda, SA Edwards, R Swanson, H Yi… - Nature, 2024 - nature.com
The current technologies to place new DNA into specific locations in plant genomes are low
frequency and error-prone, and this inefficiency hampers genome-editing approaches to …

How important are transposons for plant evolution?

D Lisch - Nature Reviews Genetics, 2013 - nature.com
For decades, transposable elements have been known to produce a wide variety of changes
in plant gene expression and function. This has led to the idea that transposable element …

The molecular biology of meiosis in plants

R Mercier, C Mézard, E Jenczewski… - Annual review of …, 2015 - annualreviews.org
Meiosis is the cell division that reshuffles genetic information between generations.
Recently, much progress has been made in understanding this process; in particular, the …

[PDF][PDF] Gene body methylation in plants: mechanisms, functions, and important implications for understanding evolutionary processes

AM Muyle, DK Seymour, Y Lv, B Huettel… - Genome biology and …, 2022 - academic.oup.com
Gene body methylation (gbM) is an epigenetic mark where gene exons are methylated in
the CG context only, as opposed to CHG and CHH contexts (where H stands for A, C, or T) …

Transposable elements, epigenetics, and genome evolution

NV Fedoroff - Science, 2012 - science.org
2012 still-prevalent view that every bit of an organism's DNA has a specific function crafted
by selection. Thus, both papers promoted Dawkins' concept of “selfish DNA”—the notion that …

The contributions of transposable elements to the structure, function, and evolution of plant genomes

JL Bennetzen, H Wang - Annual review of plant biology, 2014 - annualreviews.org
Transposable elements (TEs) are the key players in generating genomic novelty by a
combination of the chromosome rearrangements they cause and the genes that come under …

FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads

H Xu, X Luo, J Qian, X Pang, J Song, G Qian, J Chen… - PloS one, 2012 - journals.plos.org
The presence of duplicates introduced by PCR amplification is a major issue in paired short
reads from next-generation sequencing platforms. These duplicates might have a serious …