Genomic selection in plant breeding: methods, models, and perspectives

J Crossa, P Pérez-Rodríguez, J Cuevas… - Trends in plant …, 2017 - cell.com
Genomic selection (GS) facilitates the rapid selection of superior genotypes and accelerates
the breeding cycle. In this review, we discuss the history, principles, and basis of GS and …

Next-generation phenotyping: requirements and strategies for enhancing our understanding of genotype–phenotype relationships and its relevance to crop …

JN Cobb, G DeClerck, A Greenberg, R Clark… - Theoretical and Applied …, 2013 - Springer
More accurate and precise phenotyping strategies are necessary to empower high-
resolution linkage mapping and genome-wide association studies and for training genomic …

Global conservation priorities for crop wild relatives

NP Castañeda-Álvarez, CK Khoury, HA Achicanoy… - Nature plants, 2016 - nature.com
The wild relatives of domesticated crops possess genetic diversity useful for developing
more productive, nutritious and resilient crop varieties. However, their conservation status …

Increasing homogeneity in global food supplies and the implications for food security

CK Khoury, AD Bjorkman… - Proceedings of the …, 2014 - National Acad Sciences
The narrowing of diversity in crop species contributing to the world's food supplies has been
considered a potential threat to food security. However, changes in this diversity have not …

[HTML][HTML] High-throughput SNP genotyping to accelerate crop improvement

MJ Thomson - Plant Breeding and Biotechnology, 2014 - plantbreedbio.org
Recent advances in next-generation sequencing (NGS) and single nucleotide
polymorphism (SNP) genotyping promise to greatly accelerate crop improvement if properly …

Genome-wide prediction models that incorporate de novo GWAS are a powerful new tool for tropical rice improvement

JE Spindel, H Begum, D Akdemir, B Collard, E Redoña… - Heredity, 2016 - nature.com
To address the multiple challenges to food security posed by global climate change,
population growth and rising incomes, plant breeders are developing new crop varieties that …

The 3,000 rice genomes project: new opportunities and challenges for future rice research

JY Li, J Wang, RS Zeigler - Gigascience, 2014 - academic.oup.com
Rice is the world's most important staple grown by millions of small-holder farmers.
Sustaining rice production relies on the intelligent use of rice diversity. The 3,000 Rice …

Traditional and Modern Plant Breeding Methods with Examples in Rice (Oryza sativa L.)

F Breseghello, ASG Coelho - Journal of agricultural and food …, 2013 - ACS Publications
Plant breeding can be broadly defined as alterations caused in plants as a result of their use
by humans, ranging from unintentional changes resulting from the advent of agriculture to …

Applications of next‐generation sequencing in plant biology

AN Egan, J Schlueter… - American journal of …, 2012 - Wiley Online Library
The last several years have seen revolutionary advances in DNA sequencing technologies
with the advent of next‐generation sequencing (NGS) techniques. NGS methods now allow …

The USDA barley core collection: genetic diversity, population structure, and potential for genome-wide association studies

M Muñoz-Amatriaín, A Cuesta-Marcos, JB Endelman… - PloS one, 2014 - journals.plos.org
New sources of genetic diversity must be incorporated into plant breeding programs if they
are to continue increasing grain yield and quality, and tolerance to abiotic and biotic …