Information transmission in genetic regulatory networks: a review

G Tkačik, AM Walczak - Journal of Physics: Condensed Matter, 2011 - iopscience.iop.org
Genetic regulatory networks enable cells to respond to changes in internal and external
conditions by dynamically coordinating their gene expression profiles. Our ability to make …

The sociobiology of molecular systems

KR Foster - Nature Reviews Genetics, 2011 - nature.com
It is often assumed that molecular systems are designed to maximize the competitive ability
of the organism that carries them. In reality, natural selection acts on both cooperative and …

Wiring economy and volume exclusion determine neuronal placement in the Drosophila brain

M Rivera-Alba, SN Vitaladevuni, Y Mishchenko, Z Lu… - Current Biology, 2011 - cell.com
Wiring economy has successfully explained the individual placement of neurons in simple
nervous systems like that of Caenorhabditis elegans [1–3] and the locations of coarser …

Collective decision making by rational individuals

RP Mann - Proceedings of the National Academy of …, 2018 - National Acad Sciences
The patterns and mechanisms of collective decision making in humans and animals have
attracted both empirical and theoretical attention. Of particular interest has been the variety …

Optimality of syntactic dependency distances

R Ferrer-i-Cancho, C Gómez-Rodríguez, JL Esteban… - Physical Review E, 2022 - APS
It is often stated that human languages, as other biological systems, are shaped by cost-
cutting pressures but, to what extent? Attempts to quantify the degree of optimality of …

Phase transition in the economically modeled growth of a cellular nervous system

V Nicosia, PE Vértes, WR Schafer… - Proceedings of the …, 2013 - National Acad Sciences
Spatially embedded complex networks, such as nervous systems, the Internet, and
transportation networks, generally have nontrivial topological patterns of connections …

Statistical analysis and optimality of neural systems

W Młynarski, M Hledík, TR Sokolowski, G Tkačik - Neuron, 2021 - cell.com
Normative theories and statistical inference provide complementary approaches for the
study of biological systems. A normative theory postulates that organisms have adapted to …

Fluctuation relations of fitness and information in population dynamics

TJ Kobayashi, Y Sughiyama - Physical review letters, 2015 - APS
Phenotype switching with and without sensing environment is a common strategy of
organisms to survive in a fluctuating environment. Understanding the evolutionary …

The C. elegans Connectome Consists of Homogenous Circuits with Defined Functional Roles

A Azulay, E Itskovits, A Zaslaver - PLoS computational biology, 2016 - journals.plos.org
A major goal of systems neuroscience is to decipher the structure-function relationship in
neural networks. Here we study network functionality in light of the common-neighbor-rule …

Refractory sampling links efficiency and costs of sensory encoding to stimulus statistics

Z Song, M Juusola - Journal of Neuroscience, 2014 - Soc Neuroscience
Sensory neurons integrate information about the world, adapting their sampling to its
changes. However, little is understood mechanistically how this primary encoding process …