Information transmission in genetic regulatory networks: a review
G Tkačik, AM Walczak - Journal of Physics: Condensed Matter, 2011 - iopscience.iop.org
Genetic regulatory networks enable cells to respond to changes in internal and external
conditions by dynamically coordinating their gene expression profiles. Our ability to make …
conditions by dynamically coordinating their gene expression profiles. Our ability to make …
The sociobiology of molecular systems
KR Foster - Nature Reviews Genetics, 2011 - nature.com
It is often assumed that molecular systems are designed to maximize the competitive ability
of the organism that carries them. In reality, natural selection acts on both cooperative and …
of the organism that carries them. In reality, natural selection acts on both cooperative and …
Wiring economy and volume exclusion determine neuronal placement in the Drosophila brain
Wiring economy has successfully explained the individual placement of neurons in simple
nervous systems like that of Caenorhabditis elegans [1–3] and the locations of coarser …
nervous systems like that of Caenorhabditis elegans [1–3] and the locations of coarser …
Collective decision making by rational individuals
RP Mann - Proceedings of the National Academy of …, 2018 - National Acad Sciences
The patterns and mechanisms of collective decision making in humans and animals have
attracted both empirical and theoretical attention. Of particular interest has been the variety …
attracted both empirical and theoretical attention. Of particular interest has been the variety …
Optimality of syntactic dependency distances
It is often stated that human languages, as other biological systems, are shaped by cost-
cutting pressures but, to what extent? Attempts to quantify the degree of optimality of …
cutting pressures but, to what extent? Attempts to quantify the degree of optimality of …
Phase transition in the economically modeled growth of a cellular nervous system
Spatially embedded complex networks, such as nervous systems, the Internet, and
transportation networks, generally have nontrivial topological patterns of connections …
transportation networks, generally have nontrivial topological patterns of connections …
Statistical analysis and optimality of neural systems
Normative theories and statistical inference provide complementary approaches for the
study of biological systems. A normative theory postulates that organisms have adapted to …
study of biological systems. A normative theory postulates that organisms have adapted to …
Fluctuation relations of fitness and information in population dynamics
TJ Kobayashi, Y Sughiyama - Physical review letters, 2015 - APS
Phenotype switching with and without sensing environment is a common strategy of
organisms to survive in a fluctuating environment. Understanding the evolutionary …
organisms to survive in a fluctuating environment. Understanding the evolutionary …
The C. elegans Connectome Consists of Homogenous Circuits with Defined Functional Roles
A major goal of systems neuroscience is to decipher the structure-function relationship in
neural networks. Here we study network functionality in light of the common-neighbor-rule …
neural networks. Here we study network functionality in light of the common-neighbor-rule …
Refractory sampling links efficiency and costs of sensory encoding to stimulus statistics
Sensory neurons integrate information about the world, adapting their sampling to its
changes. However, little is understood mechanistically how this primary encoding process …
changes. However, little is understood mechanistically how this primary encoding process …