[HTML][HTML] New software tools, databases, and resources in metabolomics: Updates from 2020
BB Misra - Metabolomics, 2021 - Springer
Background Precision medicine, space exploration, drug discovery to characterization of
dark chemical space of habitats and organisms, metabolomics takes a centre stage in …
dark chemical space of habitats and organisms, metabolomics takes a centre stage in …
[HTML][HTML] Guiding the choice of informatics software and tools for lipidomics research applications
Z Ni, M Wölk, G Jukes, K Mendivelso Espinosa… - Nature …, 2023 - nature.com
Progress in mass spectrometry lipidomics has led to a rapid proliferation of studies across
biology and biomedicine. These generate extremely large raw datasets requiring …
biology and biomedicine. These generate extremely large raw datasets requiring …
[HTML][HTML] A non-canonical vitamin K cycle is a potent ferroptosis suppressor
Ferroptosis, a non-apoptotic form of cell death marked by iron-dependent lipid peroxidation,
has a key role in organ injury, degenerative disease and vulnerability of therapy-resistant …
has a key role in organ injury, degenerative disease and vulnerability of therapy-resistant …
[HTML][HTML] Profiling the human intestinal environment under physiological conditions
The spatiotemporal structure of the human microbiome,, proteome and metabolome, reflects
and determines regional intestinal physiology and may have implications for disease. Yet …
and determines regional intestinal physiology and may have implications for disease. Yet …
[HTML][HTML] Ozone-enabled fatty acid discovery reveals unexpected diversity in the human lipidome
Fatty acid isomers are responsible for an under-reported lipidome diversity across all
kingdoms of life. Isomers of unsaturated fatty acids are often masked in contemporary …
kingdoms of life. Isomers of unsaturated fatty acids are often masked in contemporary …
[HTML][HTML] Bacterial c-di-GMP has a key role in establishing host–microbe symbiosis
Most microbes evolve faster than their hosts and should therefore drive evolution of host–
microbe interactions. However, relatively little is known about the characteristics that define …
microbe interactions. However, relatively little is known about the characteristics that define …
[HTML][HTML] Ecophysiology and interactions of a taurine-respiring bacterium in the mouse gut
H Ye, S Borusak, C Eberl, J Krasenbrink… - Nature …, 2023 - nature.com
Taurine-respiring gut bacteria produce H2S with ambivalent impact on host health. We
report the isolation and ecophysiological characterization of a taurine-respiring mouse gut …
report the isolation and ecophysiological characterization of a taurine-respiring mouse gut …
7-Dehydrocholesterol is an endogenous suppressor of ferroptosis
FP Freitas, H Alborzinia, AF Dos Santos… - Nature, 2024 - nature.com
Ferroptosis is a form of cell death that has received considerable attention not only as a
means to eradicate defined tumour entities but also because it provides unforeseen insights …
means to eradicate defined tumour entities but also because it provides unforeseen insights …
[HTML][HTML] Chromatin regulation of transcriptional enhancers and cell fate by the Sotos syndrome gene NSD1
Nuclear receptor-binding SET-domain protein 1 (NSD1), a methyltransferase that catalyzes
H3K36me2, is essential for mammalian development and is frequently dysregulated in …
H3K36me2, is essential for mammalian development and is frequently dysregulated in …
Utilizing Skyline to analyze lipidomics data containing liquid chromatography, ion mobility spectrometry and mass spectrometry dimensions
KI Kirkwood, BS Pratt, N Shulman, K Tamura… - Nature protocols, 2022 - nature.com
Lipidomics studies suffer from analytical and annotation challenges because of the great
structural similarity of many of the lipid species. To improve lipid characterization and …
structural similarity of many of the lipid species. To improve lipid characterization and …