[HTML][HTML] New software tools, databases, and resources in metabolomics: Updates from 2020

BB Misra - Metabolomics, 2021 - Springer
Background Precision medicine, space exploration, drug discovery to characterization of
dark chemical space of habitats and organisms, metabolomics takes a centre stage in …

[HTML][HTML] Guiding the choice of informatics software and tools for lipidomics research applications

Z Ni, M Wölk, G Jukes, K Mendivelso Espinosa… - Nature …, 2023 - nature.com
Progress in mass spectrometry lipidomics has led to a rapid proliferation of studies across
biology and biomedicine. These generate extremely large raw datasets requiring …

[HTML][HTML] A non-canonical vitamin K cycle is a potent ferroptosis suppressor

E Mishima, J Ito, Z Wu, T Nakamura, A Wahida, S Doll… - Nature, 2022 - nature.com
Ferroptosis, a non-apoptotic form of cell death marked by iron-dependent lipid peroxidation,
has a key role in organ injury, degenerative disease and vulnerability of therapy-resistant …

[HTML][HTML] Profiling the human intestinal environment under physiological conditions

D Shalon, RN Culver, JA Grembi, J Folz, PV Treit, H Shi… - Nature, 2023 - nature.com
The spatiotemporal structure of the human microbiome,, proteome and metabolome, reflects
and determines regional intestinal physiology and may have implications for disease. Yet …

[HTML][HTML] Ozone-enabled fatty acid discovery reveals unexpected diversity in the human lipidome

JP Menzel, RSE Young, AH Benfield, JS Scott… - Nature …, 2023 - nature.com
Fatty acid isomers are responsible for an under-reported lipidome diversity across all
kingdoms of life. Isomers of unsaturated fatty acids are often masked in contemporary …

[HTML][HTML] Bacterial c-di-GMP has a key role in establishing host–microbe symbiosis

N Obeng, A Czerwinski, D Schütz, J Michels… - Nature …, 2023 - nature.com
Most microbes evolve faster than their hosts and should therefore drive evolution of host–
microbe interactions. However, relatively little is known about the characteristics that define …

[HTML][HTML] Ecophysiology and interactions of a taurine-respiring bacterium in the mouse gut

H Ye, S Borusak, C Eberl, J Krasenbrink… - Nature …, 2023 - nature.com
Taurine-respiring gut bacteria produce H2S with ambivalent impact on host health. We
report the isolation and ecophysiological characterization of a taurine-respiring mouse gut …

7-Dehydrocholesterol is an endogenous suppressor of ferroptosis

FP Freitas, H Alborzinia, AF Dos Santos… - Nature, 2024 - nature.com
Ferroptosis is a form of cell death that has received considerable attention not only as a
means to eradicate defined tumour entities but also because it provides unforeseen insights …

[HTML][HTML] Chromatin regulation of transcriptional enhancers and cell fate by the Sotos syndrome gene NSD1

Z Sun, Y Lin, MT Islam, R Koche, L Hedehus, D Liu… - Molecular Cell, 2023 - cell.com
Nuclear receptor-binding SET-domain protein 1 (NSD1), a methyltransferase that catalyzes
H3K36me2, is essential for mammalian development and is frequently dysregulated in …

Utilizing Skyline to analyze lipidomics data containing liquid chromatography, ion mobility spectrometry and mass spectrometry dimensions

KI Kirkwood, BS Pratt, N Shulman, K Tamura… - Nature protocols, 2022 - nature.com
Lipidomics studies suffer from analytical and annotation challenges because of the great
structural similarity of many of the lipid species. To improve lipid characterization and …