A comprehensive repertoire of prokaryotic species identified in human beings

P Hugon, JC Dufour, P Colson, PE Fournier… - The Lancet Infectious …, 2015 - thelancet.com
The compilation of the complete prokaryotic repertoire associated with human beings as
commensals or pathogens is a major goal for the scientific and medical community. The use …

[HTML][HTML] Culturomics of the plant prokaryotic microbiome and the dawn of plant-based culture media–a review

MS Sarhan, MA Hamza, HH Youssef, S Patz… - Journal of Advanced …, 2019 - Elsevier
Improving cultivability of a wider range of bacterial and archaeal community members, living
natively in natural environments and within plants, is a prerequisite to better understanding …

Valid publication of the names of forty-two phyla of prokaryotes

A Oren, GM Garrity - International Journal of Systematic …, 2021 - microbiologyresearch.org
After the International Committee on Systematics of Prokaryotes (ICSP) had voted to include
the rank of phylum in the rules of the International Code of Nomenclature of Prokaryotes …

Insights into the phylogeny and coding potential of microbial dark matter

C Rinke, P Schwientek, A Sczyrba, NN Ivanova… - Nature, 2013 - nature.com
Genome sequencing enhances our understanding of the biological world by providing
blueprints for the evolutionary and functional diversity that shapes the biosphere. However …

Ammonia stress reduces antibiotic efflux but enriches horizontal gene transfer of antibiotic resistance genes in anaerobic digestion

J Zhang, C Buhe, D Yu, H Zhong, Y Wei - Bioresource Technology, 2020 - Elsevier
The dynamics of antibiotic resistance genes (ARGs) response to ammonia stress were
evaluated using metagenomics and quantitative PCR (qPCR) in anaerobic digestion (AD) …

Sediment microbial communities in Great Boiling Spring are controlled by temperature and distinct from water communities

JK Cole, JP Peacock, JA Dodsworth… - The ISME …, 2013 - academic.oup.com
Abstract Great Boiling Spring is a large, circumneutral, geothermal spring in the US Great
Basin. Twelve samples were collected from water and four different sediment sites on four …

How anammox process resists the multi-antibiotic stress: Resistance gene accumulation and microbial community evolution

JJ Fu, DQ Huang, YH Bai, YY Shen, XZ Lin… - Science of The Total …, 2022 - Elsevier
The effects of multiple antibiotics on the anaerobic ammonia oxidation (anammox) process
were investigated. The resistance of the anammox system to high-concentration antibiotics …

Reaching unreachables: Obstacles and successes of microbial cultivation and their reasons

G Kapinusova, MA Lopez Marin, O Uhlik - Frontiers in Microbiology, 2023 - frontiersin.org
In terms of the number and diversity of living units, the prokaryotic empire is the most
represented form of life on Earth, and yet it is still to a significant degree shrouded in …

A new family of CRISPR‐type V nucleases with C‐rich PAM recognition

T Urbaitis, G Gasiunas, JK Young, Z Hou, S Paulraj… - EMBO …, 2022 - embopress.org
Most CRISPR‐type V nucleases are stimulated to cleave double‐stranded (ds) DNA targets
by a T‐rich PAM, which restricts their targeting range. Here, we identify and characterize a …

Phylogenetic revisit to a review on predatory bacteria

S Kamada, R Wakabayashi, T Naganuma - Microorganisms, 2023 - mdpi.com
Predatory bacteria, along with the biology of their predatory behavior, have attracted interest
in terms of their ecological significance and industrial applications, a trend that has been …