Applications of support vector machine (SVM) learning in cancer genomics

S Huang, N Cai, PP Pacheco… - Cancer genomics & …, 2018 - cgp.iiarjournals.org
Machine learning with maximization (support) of separating margin (vector), called support
vector machine (SVM) learning, is a powerful classification tool that has been used for …

[PDF][PDF] Machine learning in bioinformatics

P Larranaga, B Calvo, R Santana… - Briefings in …, 2006 - academic.oup.com
This article reviews machine learning methods for bioinformatics. It presents modelling
methods, such as supervised classification, clustering and probabilistic graphical models for …

Interferome v2. 0: an updated database of annotated interferon-regulated genes

I Rusinova, S Forster, S Yu, A Kannan… - Nucleic acids …, 2012 - academic.oup.com
Abstract Interferome v2. 0 (http://interferome. its. monash. edu. au/interferome/) is an update
of an earlier version of the Interferome DB published in the 2009 NAR database edition …

[图书][B] Sample size calculations in clinical research

SC Chow, J Shao, H Wang, Y Lokhnygina - 2017 - api.taylorfrancis.com
Praise for the Second Edition:"… this is a useful, comprehensive compendium of almost
every possible sample size formula. The strong organization and carefully defined formulae …

[9] TM4 microarray software suite

AI Saeed, NK Bhagabati, JC Braisted, W Liang… - Methods in …, 2006 - Elsevier
Powerful specialized software is essential for managing, quantifying, and ultimately deriving
scientific insight from results of a microarray experiment. We have developed a suite of …

Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments

R Breitling, P Armengaud, A Amtmann, P Herzyk - FEBS letters, 2004 - Wiley Online Library
One of the main objectives in the analysis of microarray experiments is the identification of
genes that are differentially expressed under two experimental conditions. This task is …

Gene regulatory network inference: data integration in dynamic models—a review

M Hecker, S Lambeck, S Toepfer, E Van Someren… - Biosystems, 2009 - Elsevier
Systems biology aims to develop mathematical models of biological systems by integrating
experimental and theoretical techniques. During the last decade, many systems biological …

Statistical tests for differential expression in cDNA microarray experiments

X Cui, GA Churchill - Genome biology, 2003 - Springer
Extracting biological information from microarray data requires appropriate statistical
methods. The simplest statistical method for detecting differential expression is the t test …

[PDF][PDF] Nonalcoholic steatohepatitis is associated with altered hepatic MicroRNA expression

O Cheung, P Puri, C Eicken, MJ Contos… - …, 2008 - Wiley Online Library
The expression of microRNA in nonalcoholic steatohepatitis (NASH) and their role in the
genesis of NASH are not known. The aims of this study were to:(1) identify differentially …

Detecting differential gene expression with a semiparametric hierarchical mixture method

MA Newton, A Noueiry, D Sarkar, P Ahlquist - Biostatistics, 2004 - academic.oup.com
Mixture modeling provides an effective approach to the differential expression problem in
microarray data analysis. Methods based on fully parametric mixture models are available …