Trans-omics: how to reconstruct biochemical networks across multiple 'omic'layers

K Yugi, H Kubota, A Hatano, S Kuroda - Trends in biotechnology, 2016 - cell.com
We propose 'trans-omic'analysis for reconstructing global biochemical networks across
multiple omic layers by use of both multi-omic measurements and computational data …

The 5-phosphatase OCRL in Lowe syndrome and Dent disease 2

MA De Matteis, L Staiano, F Emma… - Nature Reviews …, 2017 - nature.com
Lowe syndrome is an X-linked disease that is characterized by congenital cataracts, central
hypotonia, intellectual disability and renal Fanconi syndrome. The disease is caused by …

The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible

D Szklarczyk, JH Morris, H Cook, M Kuhn… - Nucleic acids …, 2016 - academic.oup.com
A system-wide understanding of cellular function requires knowledge of all functional
interactions between the expressed proteins. The STRING database aims to collect and …

Umbilical mesenchymal stem cell-derived exosomes facilitate spinal cord functional recovery through the miR-199a-3p/145-5p-mediated NGF/TrkA signaling pathway …

Y Wang, X Lai, D Wu, B Liu, N Wang… - Stem cell research & …, 2021 - Springer
Background Although exosomes, as byproducts of human umbilical cord mesenchymal stem
cells (hUC-MSCs), have been demonstrated to be an effective therapy for traumatic spinal …

Mutations in ALK signaling pathways conferring resistance to ALK inhibitor treatment lead to collateral vulnerabilities in neuroblastoma cells

M Berlak, E Tucker, M Dorel, A Winkler, A McGearey… - Molecular Cancer, 2022 - Springer
Background Development of resistance to targeted therapies has tempered initial optimism
that precision oncology would improve poor outcomes for cancer patients. Resistance …

[HTML][HTML] VDAC1 at the crossroads of cell metabolism, apoptosis and cell stress

V Shoshan-Barmatz, EN Maldonado, Y Krelin - Cell stress, 2017 - ncbi.nlm.nih.gov
This review presents current knowledge related to VDAC1 as a multi-functional
mitochondrial protein acting on both sides of the coin, regulating cell life and death, and …

Ornithine aminotransferase, an important glutamate-metabolizing enzyme at the crossroads of multiple metabolic pathways

A Ginguay, L Cynober, E Curis, I Nicolis - Biology, 2017 - mdpi.com
Ornithine δ-aminotransferase (OAT, EC 2.6. 1.13) catalyzes the transfer of the δ-amino
group from ornithine (Orn) to α-ketoglutarate (aKG), yielding glutamate-5-semialdehyde and …

Neuroblastoma treatment in the post-genomic era

MR Esposito, S Aveic, A Seydel, GP Tonini - Journal of biomedical science, 2017 - Springer
Neuroblastoma is an embryonic malignancy of early childhood originating from neural crest
cells and showing heterogeneous biological, morphological, genetic and clinical …

Elucidating the role of ubiquitination and deubiquitination in osteoarthritis progression

C Zheng, J Chen, Y Wu, X Wang, Y Lin, L Shu… - Frontiers in …, 2023 - frontiersin.org
Osteoarthritis is non-inflammatory degenerative joint arthritis, which exacerbates disability in
elder persons. The molecular mechanisms of osteoarthritis are elusive. Ubiquitination, one …

Towards comprehensive and quantitative proteomics for diagnosis and therapy of human disease

P Cifani, A Kentsis - Proteomics, 2017 - Wiley Online Library
Given superior analytical features, MS proteomics is well suited for the basic investigation
and clinical diagnosis of human disease. Modern MS enables detailed functional …