Global genetic diversity status and trends: towards a suite of Essential Biodiversity Variables (EBVs) for genetic composition
Biodiversity underlies ecosystem resilience, ecosystem function, sustainable economies,
and human well‐being. Understanding how biodiversity sustains ecosystems under …
and human well‐being. Understanding how biodiversity sustains ecosystems under …
A systematic review of spatial decision support systems in public health informatics supporting the identification of high risk areas for zoonotic disease outbreaks
Background Zoonotic diseases account for a substantial portion of infectious disease
outbreaks and burden on public health programs to maintain surveillance and preventative …
outbreaks and burden on public health programs to maintain surveillance and preventative …
Location extraction from social media: Geoparsing, location disambiguation, and geotagging
SE Middleton, G Kordopatis-Zilos… - ACM Transactions on …, 2018 - dl.acm.org
Location extraction, also called “toponym extraction,” is a field covering geoparsing,
extracting spatial representations from location mentions in text, and geotagging, assigning …
extracting spatial representations from location mentions in text, and geotagging, assigning …
Two hundred and five newly assembled mitogenomes provide mixed evidence for rivers as drivers of speciation for Amazonian primates
Mitochondrial DNA remains a cornerstone for molecular ecology, especially for study
species from which high‐quality tissue samples cannot be easily obtained. Methods using …
species from which high‐quality tissue samples cannot be easily obtained. Methods using …
Extracting and modeling geographic information from scientific articles
Scientific articles often contain relevant geographic information such as where field work
was performed or where patients were treated. Most often, this information appears in the full …
was performed or where patients were treated. Most often, this information appears in the full …
Biodiversity at the global scale: the synthesis continues
RA Folk, CM Siniscalchi - American Journal of Botany, 2021 - Wiley Online Library
Traditionally, the generation and use of biodiversity data and their associated specimen
objects have been primarily the purview of individuals and small research groups. While …
objects have been primarily the purview of individuals and small research groups. While …
Seqenv: linking sequences to environments through text mining
Understanding the distribution of taxa and associated traits across different environments is
one of the central questions in microbial ecology. High-throughput sequencing (HTS) …
one of the central questions in microbial ecology. High-throughput sequencing (HTS) …
GeoBoost: accelerating research involving the geospatial metadata of virus GenBank records
GeoBoost is a command-line software package developed to address sparse or incomplete
metadata in GenBank sequence records that relate to the location of the infected host (LOIH) …
metadata in GenBank sequence records that relate to the location of the infected host (LOIH) …
Bi-directional recurrent neural network models for geographic location extraction in biomedical literature
Phylogeography research involving virus spread and tree reconstruction relies on accurate
geographic locations of infected hosts. Insufficient level of geographic information in …
geographic locations of infected hosts. Insufficient level of geographic information in …
GeoBoost2: a natural languageprocessing pipeline for GenBank metadata enrichment for virus phylogeography
We present GeoBoost2, a natural language-processing pipeline for extracting the location of
infected hosts for enriching metadata in nucleotide sequences repositories like National …
infected hosts for enriching metadata in nucleotide sequences repositories like National …