Two decades of Martini: Better beads, broader scope
The Martini model, a coarse‐grained force field for molecular dynamics simulations, has
been around for nearly two decades. Originally developed for lipid‐based systems by the …
been around for nearly two decades. Originally developed for lipid‐based systems by the …
Multifaceted computational modeling in glycoscience
S Perez, O Makshakova - Chemical Reviews, 2022 - ACS Publications
Glycoscience assembles all the scientific disciplines involved in studying various molecules
and macromolecules containing carbohydrates and complex glycans. Such an ensemble …
and macromolecules containing carbohydrates and complex glycans. Such an ensemble …
Pragmatic coarse-graining of proteins: models and applications
The molecular details involved in the folding, dynamics, organization, and interaction of
proteins with other molecules are often difficult to assess by experimental techniques …
proteins with other molecules are often difficult to assess by experimental techniques …
Martini 3 coarse-grained force field for carbohydrates
F Grünewald, MH Punt, EE Jefferys… - Journal of Chemical …, 2022 - ACS Publications
The Martini 3 force field is a full reparametrization of the Martini coarse-grained model for
biomolecular simulations. Due to the improved interaction balance, it allows for a more …
biomolecular simulations. Due to the improved interaction balance, it allows for a more …
Facilitating CG simulations with MAD: The MArtini database server
The MArtini Database (MAD-https://mad. ibcp. fr) is a web server designed for the sharing of
structures and topologies of molecules parametrized with the Martini coarse-grained (CG) …
structures and topologies of molecules parametrized with the Martini coarse-grained (CG) …
Extending the Martini 3 coarse-grained force field to carbohydrates
V Lutsyk, P Wolski, W Plazinski - Journal of Chemical Theory and …, 2022 - ACS Publications
Carbohydrates play an essential role in a large number of chemical and biochemical
processes. High structural diversity and conformational heterogeneity make it problematic to …
processes. High structural diversity and conformational heterogeneity make it problematic to …
Structure and dynamics of the SARS‐CoV‐2 envelope protein monomer
A Kuzmin, P Orekhov, R Astashkin… - Proteins: Structure …, 2022 - Wiley Online Library
Coronaviruses, especially severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2),
present an ongoing threat to human wellbeing. Consequently, elucidation of molecular …
present an ongoing threat to human wellbeing. Consequently, elucidation of molecular …
Allosteric activation of T cell antigen receptor signaling by quaternary structure relaxation
AL Lanz, G Masi, N Porciello, A Cohnen, D Cipria… - Cell reports, 2021 - cell.com
The mechanism of T cell antigen receptor (TCR-CD3) signaling remains elusive. Here, we
identify mutations in the transmembrane region of TCRβ or CD3ζ that augment peptide …
identify mutations in the transmembrane region of TCRβ or CD3ζ that augment peptide …
Molecular dynamics simulations for rationalizing polymer bioconjugation strategies: Challenges, recent developments, and future opportunities
J Kehrein, C Sotriffer - ACS Biomaterials Science & Engineering, 2023 - ACS Publications
The covalent modification of proteins with polymers is a well-established method for
improving the pharmacokinetic properties of therapeutically valuable biologics. The …
improving the pharmacokinetic properties of therapeutically valuable biologics. The …
Boundary Lubrication Performance of Polyelectrolyte–Surfactant Complexes on Biomimetic Surfaces
Aqueous mixtures of oppositely charged polyelectrolytes and surfactants are useful in many
industrial applications, such as shampoos and hair conditioners. In this work, we investigate …
industrial applications, such as shampoos and hair conditioners. In this work, we investigate …