Cross-linking mass spectrometry for investigating protein conformations and protein–protein interactions─ a method for all seasons
L Piersimoni, PL Kastritis, C Arlt, A Sinz - Chemical Reviews, 2021 - ACS Publications
Mass spectrometry (MS) has become one of the key technologies of structural biology. In this
review, the contributions of chemical cross-linking combined with mass spectrometry (XL …
review, the contributions of chemical cross-linking combined with mass spectrometry (XL …
[HTML][HTML] Histone ubiquitination: an integrative signaling platform in genome stability
F Mattiroli, L Penengo - Trends in Genetics, 2021 - cell.com
Complex mechanisms are in place to maintain genome stability. Ubiquitination of chromatin
plays a central role in these mechanisms. The ever-growing complexity of the ubiquitin (Ub) …
plays a central role in these mechanisms. The ever-growing complexity of the ubiquitin (Ub) …
BRCA1/BARD1 site-specific ubiquitylation of nucleosomal H2A is directed by BARD1
Mutations in the E3 ubiquitin ligase RING domains of BRCA1/BARD1 predispose carriers to
breast and ovarian cancers. We present the structure of the BRCA1/BARD1 RING …
breast and ovarian cancers. We present the structure of the BRCA1/BARD1 RING …
The ubiquitin codes in cellular stress responses
Ubiquitination/ubiquitylation, one of the most fundamental post-translational modifications,
regulates almost every critical cellular process in eukaryotes. Emerging evidence has shown …
regulates almost every critical cellular process in eukaryotes. Emerging evidence has shown …
Small-molecule inhibitors targeting Polycomb repressive complex 1 RING domain
Abstract Polycomb repressive complex 1 (PRC1) is an essential chromatin-modifying
complex that monoubiquitinates histone H2A and is involved in maintaining the repressed …
complex that monoubiquitinates histone H2A and is involved in maintaining the repressed …
Preserving genome integrity and function: the DNA damage response and histone modifications
Modulation of chromatin templates in response to cellular cues, including DNA damage,
relies heavily on the post-translation modification of histones. Numerous types of histone …
relies heavily on the post-translation modification of histones. Numerous types of histone …
A methyl-TROSY approach for NMR studies of high-molecular-weight DNA with application to the nucleosome core particle
G Abramov, A Velyvis, E Rennella… - Proceedings of the …, 2020 - National Acad Sciences
The development of methyl-transverse relaxation-optimized spectroscopy (methyl-TROSY)–
based NMR methods, in concert with robust strategies for incorporation of methyl-group …
based NMR methods, in concert with robust strategies for incorporation of methyl-group …
Ad hoc learning of peptide fragmentation from mass spectra enables an interpretable detection of phosphorylated and cross-linked peptides
Mass spectrometry-based proteomics provides a holistic snapshot of the entire protein set of
living cells on a molecular level. Currently, only a few deep learning approaches exist that …
living cells on a molecular level. Currently, only a few deep learning approaches exist that …
Federating structural models and data: outcomes from a workshop on archiving integrative structures
Structures of biomolecular systems are increasingly computed by integrative modeling. In
this approach, a structural model is constructed by combining information from multiple …
this approach, a structural model is constructed by combining information from multiple …
Epstein-Barr virus protein BKRF4 restricts nucleosome assembly to suppress host antiviral responses
J Chen, Z Lu, W Gong, X Xiao, X Feng… - Proceedings of the …, 2022 - National Acad Sciences
Inhibition of host DNA damage response (DDR) is a common mechanism used by viruses to
manipulate host cellular machinery and orchestrate viral life cycles. Epstein-Barr virus …
manipulate host cellular machinery and orchestrate viral life cycles. Epstein-Barr virus …