Horizontal gene transfer in eukaryotes: aligning theory with data

PJ Keeling - Nature Reviews Genetics, 2024 - nature.com
Horizontal gene transfer (HGT), or lateral gene transfer, is the non-sexual movement of
genetic information between genomes. It has played a pronounced part in bacterial and …

Multiple Horizontal Acquisitions of Plant Genes in the Whitefly Bemisia tabaci

C Gilbert, F Maumus - Genome Biology and Evolution, 2022 - academic.oup.com
The extent to which horizontal gene transfer (HGT) has shaped eukaryote evolution remains
an open question. Two recent studies reported four plant-like genes acquired through two …

A unique symbiosome in an anaerobic single-celled eukaryote

J Jerlström-Hultqvist, L Gallot-Lavallée… - Nature …, 2024 - nature.com
Symbiotic relationships between eukaryotes and prokaryotes played pivotal roles in the
evolution of life and drove the emergence of specialized symbiotic structures in animals …

TIdeS: a comprehensive framework for accurate open reading frame identification and classification in eukaryotic transcriptomes

XX Maurer-Alcalá, E Kim - Genome Biology and Evolution, 2024 - academic.oup.com
Studying fundamental aspects of eukaryotic biology through genetic information can face
numerous challenges, including contamination and intricate biotic interactions, which are …

Rethinking large scale phylogenomics with PhyloToL 6, a flexible toolkit to enable phylogeny-informed data curation and analysis

A Cote-L'Heureux, M Leleu, G Ani, R Gawron, LA Katz - bioRxiv, 2024 - biorxiv.org
The bulk of eukaryotic diversity is microbial, with macroscopic lineages such as plant,
animals and fungi nesting among a plethora of diverse lineages that include amoebae …

Revealing the rise of a living fossil menagerie

S Lidgard, E Kitchen - Frontiers in Ecology and Evolution, 2023 - frontiersin.org
The living fossil concept continues to foster development of integrative research, as it has
done since Darwin's use of the term in 1859. It has been applied to a vast menagerie of …

Database Bias in the Detection of Interdomain Horizontal Gene Transfer Events in Pezizomycotina

K Aguirre-Carvajal, CR Munteanu, V Armijos-Jaramillo - Biology, 2024 - mdpi.com
Simple Summary Bacteria increase their genetic diversity by acquiring genetic material from
a variety of organisms across different species, a process known as horizontal gene transfer …

The probability of a unique gene occurrence at the tips of a phylogenetic tree in the absence of horizontal gene transfer (the last-one-out)

N Bremer, WF Martin, M Steel - bioRxiv, 2024 - biorxiv.org
Gene loss is an important process in gene and genome evolution. If a gene is present at the
root of a rooted binary phylogenetic tree and can be lost in one descendant lineage, it can …

Horizontal Gene Transfer in Fungi and Its Ecological Importance

C Gonçalves, CT Hittinger, A Rokas - Fungal Associations, 2024 - Springer
Fungi are one of the most diverse kingdoms in the tree of life, thrive in virtually every habitat
on the planet, and are vital for a plethora of ecosystems and human-related activities. The …

Vector Representations of Conflict in American Political Institutions

C Handan-Nader - 2024 - search.proquest.com
Latent variables factor prominently into theoretical models of political conflict, and estimates
of latent variables using latent variable models often appear in empirical political science …