Decoding the tumor microenvironment with spatial technologies
LA Walsh, DF Quail - Nature Immunology, 2023 - nature.com
Visualization of the cellular heterogeneity and spatial architecture of the tumor
microenvironment (TME) is becoming increasingly important to understand mechanisms of …
microenvironment (TME) is becoming increasingly important to understand mechanisms of …
IL-1β+ macrophages fuel pathogenic inflammation in pancreatic cancer
N Caronni, F La Terza, FM Vittoria, G Barbiera… - Nature, 2023 - nature.com
Pancreatic ductal adenocarcinoma (PDAC) is a lethal disease with high resistance to
therapies. Inflammatory and immunomodulatory signals co-exist in the pancreatic tumour …
therapies. Inflammatory and immunomodulatory signals co-exist in the pancreatic tumour …
De novo detection of somatic mutations in high-throughput single-cell profiling data sets
Abstract Characterization of somatic mutations at single-cell resolution is essential to study
cancer evolution, clonal mosaicism and cell plasticity. Here, we describe SComatic, an …
cancer evolution, clonal mosaicism and cell plasticity. Here, we describe SComatic, an …
Spatial transcriptomics in development and disease
The proper functioning of diverse biological systems depends on the spatial organization of
their cells, a critical factor for biological processes like shaping intricate tissue functions and …
their cells, a critical factor for biological processes like shaping intricate tissue functions and …
Multi-omic profiling of clear cell renal cell carcinoma identifies metabolic reprogramming associated with disease progression
J Hu, SG Wang, Y Hou, Z Chen, L Liu, R Li, N Li… - Nature Genetics, 2024 - nature.com
Clear cell renal cell carcinoma (ccRCC) is a complex disease with remarkable immune and
metabolic heterogeneity. Here we perform genomic, transcriptomic, proteomic, metabolomic …
metabolic heterogeneity. Here we perform genomic, transcriptomic, proteomic, metabolomic …
Decoder-seq enhances mRNA capture efficiency in spatial RNA sequencing
J Cao, Z Zheng, D Sun, X Chen, R Cheng, T Lv… - Nature …, 2024 - nature.com
Spatial transcriptomics technologies with high resolution often lack high sensitivity in mRNA
detection. Here we report a dendrimeric DNA coordinate barcoding design for spatial RNA …
detection. Here we report a dendrimeric DNA coordinate barcoding design for spatial RNA …
Domain generalization enables general cancer cell annotation in single-cell and spatial transcriptomics
Z Zhong, J Hou, Z Yao, L Dong, F Liu, J Yue… - Nature …, 2024 - nature.com
Single-cell and spatial transcriptome sequencing, two recently optimized transcriptome
sequencing methods, are increasingly used to study cancer and related diseases. Cell …
sequencing methods, are increasingly used to study cancer and related diseases. Cell …
Single‐cell profiling identifies distinct hormonal, immunologic, and inflammatory signatures of endometriosis‐constituting cells
Endometriosis consists of ectopic endometrial epithelial cells (EEECs) and ectopic
endometrial stromal cells (EESCs) mixed with heterogeneous stromal cells. To address how …
endometrial stromal cells (EESCs) mixed with heterogeneous stromal cells. To address how …
Mesenchymal-like tumor cells and myofibroblastic cancer-associated fibroblasts are associated with progression and immunotherapy response of clear cell renal cell …
G Davidson, A Helleux, YA Vano, V Lindner, A Fattori… - Cancer Research, 2023 - AACR
Immune checkpoint inhibitors (ICI) represent the cornerstone for the treatment of patients
with metastatic clear cell renal cell carcinoma (ccRCC). Despite a favorable response for a …
with metastatic clear cell renal cell carcinoma (ccRCC). Despite a favorable response for a …
Single-cell RNA sequencing in cancer research: discovering novel biomarkers and therapeutic targets for immune checkpoint blockade
Immune checkpoint blockade (ICB) has become a promising strategy in treating advanced
cancers, providing significant survival benefits for patients with various cancer types …
cancers, providing significant survival benefits for patients with various cancer types …