Novel machine learning approaches revolutionize protein knowledge
Breakthrough methods in machine learning (ML), protein structure prediction, and novel
ultrafast structural aligners are revolutionizing structural biology. Obtaining accurate models …
ultrafast structural aligners are revolutionizing structural biology. Obtaining accurate models …
RCSB Protein Data Bank (RCSB. org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from …
Abstract The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB
PDB), founding member of the Worldwide Protein Data Bank (wwPDB), is the US data center …
PDB), founding member of the Worldwide Protein Data Bank (wwPDB), is the US data center …
RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental …
Abstract The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB
PDB), the US data center for the global PDB archive and a founding member of the …
PDB), the US data center for the global PDB archive and a founding member of the …
Structure of papain-like protease from SARS-CoV-2 and its complexes with non-covalent inhibitors
J Osipiuk, SA Azizi, S Dvorkin, M Endres… - Nature …, 2021 - nature.com
The pandemic caused by Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-
2) continues to expand. Papain-like protease (PLpro) is one of two SARS-CoV-2 proteases …
2) continues to expand. Papain-like protease (PLpro) is one of two SARS-CoV-2 proteases …
RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D
Abstract The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB
PDB), funded by the US National Science Foundation, National Institutes of Health, and …
PDB), funded by the US National Science Foundation, National Institutes of Health, and …
RCSB Protein Data Bank: architectural advances towards integrated searching and efficient access to macromolecular structure data from the PDB archive
Abstract The US Research Collaboratory for Structural Bioinformatics Protein Data Bank
(RCSB PDB) serves many millions of unique users worldwide by delivering experimentally …
(RCSB PDB) serves many millions of unique users worldwide by delivering experimentally …
[HTML][HTML] Beyond sequence: Structure-based machine learning
Recent breakthroughs in protein structure prediction demarcate the start of a new era in
structural bioinformatics. Combined with various advances in experimental structure …
structural bioinformatics. Combined with various advances in experimental structure …
Protein structure and folding pathway prediction based on remote homologs recognition using PAthreader
Recognition of remote homologous structures is a necessary module in AlphaFold2 and is
also essential for the exploration of protein folding pathways. Here, we propose a method …
also essential for the exploration of protein folding pathways. Here, we propose a method …
In-silico evidence for a two receptor based strategy of SARS-CoV-2
We propose a computational investigation on the interaction mechanisms between SARS-
CoV-2 spike protein and possible human cell receptors. In particular, we make use of our …
CoV-2 spike protein and possible human cell receptors. In particular, we make use of our …
RCSB protein data bank: efficient searching and simultaneous access to one million computed structure models alongside the PDB structures enabled by architectural …
S Bittrich, C Bhikadiya, C Bi, H Chao, JM Duarte… - Journal of molecular …, 2023 - Elsevier
Abstract The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB
PDB) provides open access to experimentally-determined three-dimensional (3D) structures …
PDB) provides open access to experimentally-determined three-dimensional (3D) structures …