Environmental proteomics: analysis of structure and function of microbial communities

T Schneider, K Riedel - Proteomics, 2010 - Wiley Online Library
Prokaryotic and eukaryotic microorganisms make a vital contribution to biogeochemical
cycles by decomposing virtually all natural compounds and thereby exert a lasting effect on …

Experimental and computational approaches to quantitative proteomics: status quo and outlook

A Panchaud, M Affolter, P Moreillon, M Kussmann - Journal of proteomics, 2008 - Elsevier
Proteomics has come a long way from the initial qualitative analysis of proteins present in a
given sample at a given time (“cataloguing”) to large-scale characterization of proteomes …

Comprehensive analysis of protein glycosylation by solid-phase extraction of N-linked glycans and glycosite-containing peptides

S Sun, P Shah, ST Eshghi, W Yang, N Trikannad… - Nature …, 2016 - nature.com
Comprehensive characterization of protein glycosylation is critical for understanding the
structure and function of glycoproteins. However, due to the complexity and heterogeneity of …

Proteome-wide analysis of protein carboxy termini: C terminomics

O Schilling, O Barré, PF Huesgen, CM Overall - Nature methods, 2010 - nature.com
As proteome-wide C-terminal sequence analysis has been largely intractable, we
developed a polymer-based enrichment approach to profile protein C-terminal peptides by …

Chemical modification-assisted bisulfite sequencing (CAB-Seq) for 5-carboxylcytosine detection in DNA

X Lu, CX Song, K Szulwach, Z Wang… - Journal of the …, 2013 - ACS Publications
5-Methylcytosine (5mC) in DNA can be oxidized stepwise to 5-hydroxymethylcytosine
(5hmC), 5-formylcytosine (5fC), and 5-carboxylcytosine (5caC) by the TET family proteins …

Mass spectrometric analysis of sialylated glycans with use of solid-phase labeling of sialic acids

P Shah, S Yang, S Sun, P Aiyetan, KJ Yarema… - Analytical …, 2013 - ACS Publications
The analysis of sialylated glycans is critical for understanding the role of sialic acid in normal
biological processes as well as in disease. However, the labile nature of sialic acid typically …

Quantitative plant proteomics

LV Bindschedler, R Cramer - Proteomics, 2011 - Wiley Online Library
Quantitation is an inherent requirement in comparative proteomics and there is no exception
to this for plant proteomics. Quantitative proteomics has high demands on the experimental …

Site-Specific Profiling of Serum Glycoproteins Using N-Linked Glycan and Glycosite Analysis Revealing Atypical N-Glycosylation Sites on Albumin and α-1B …

S Sun, Y Hu, L Jia, ST Eshghi, Y Liu, P Shah… - Analytical …, 2018 - ACS Publications
Most serum proteins are N-linked glycosylated, and therefore the glycoproteomic profiling of
serum is essential for characterization of serum proteins. In this study, we profiled serum N …

Profiling techniques in nutrition and health research

M Kussmann, S Rezzi, H Daniel - Current opinion in biotechnology, 2008 - Elsevier
Nutrition sciences apply transcriptomics, proteomics and metabolomics to molecularly
assess nutritional adaptations. Transcriptomics can generate a holistic overview on …

Simultaneous and specific enrichment of several amphenicol antibiotics residues in food based on novel aptamer functionalized magnetic adsorbents using HPLC …

S Huang, N Gan, H Liu, Y Zhou, Y Chen… - Journal of Chromatography …, 2017 - Elsevier
In this work, a novel aptamer functionalized magnetic adsorbent was developed and
combined with magnetic dispersive solid phase extraction (MDSPE) for selective enrichment …