A guide to state–space modeling of ecological time series

M Auger‐Méthé, K Newman, D Cole… - Ecological …, 2021 - Wiley Online Library
State–space models (SSMs) are an important modeling framework for analyzing ecological
time series. These hierarchical models are commonly used to model population dynamics …

Hidden Markov models: Pitfalls and opportunities in ecology

R Glennie, T Adam, V Leos‐Barajas… - Methods in Ecology …, 2023 - Wiley Online Library
Abstract Hidden Markov models (HMMs) and their extensions are attractive methods for
analysing ecological data where noisy, multivariate measurements are made of a hidden …

momentuHMM: R package for generalized hidden Markov models of animal movement

BT McClintock, T Michelot - Methods in Ecology and Evolution, 2018 - Wiley Online Library
Discrete‐time hidden Markov models (HMMs) have become an immensely popular tool for
inferring latent animal behaviours from telemetry data. While movement HMMs typically rely …

[图书][B] Animal movement: statistical models for telemetry data

MB Hooten, DS Johnson, BT McClintock, JM Morales - 2017 - taylorfrancis.com
The study of animal movement has always been a key element in ecological science,
because it is inherently linked to critical processes that scale from individuals to populations …

[HTML][HTML] Path segmentation for beginners: an overview of current methods for detecting changes in animal movement patterns

H Edelhoff, J Signer, N Balkenhol - Movement ecology, 2016 - Springer
Increased availability of high-resolution movement data has led to the development of
numerous methods for studying changes in animal movement behavior. Path segmentation …

[HTML][HTML] Animal-borne telemetry: an integral component of the ocean observing toolkit

R Harcourt, AMM Sequeira, X Zhang… - Frontiers in Marine …, 2019 - frontiersin.org
Animal telemetry is a powerful tool for observing marine animals and the physical
environments that they inhabit, from coastal and continental shelf ecosystems to polar seas …

Statistical modelling of individual animal movement: an overview of key methods and a discussion of practical challenges

TA Patterson, A Parton, R Langrock… - AStA Advances in …, 2017 - Springer
With the influx of complex and detailed tracking data gathered from electronic tracking
devices, the analysis of animal movement data has recently emerged as a cottage industry …

[HTML][HTML] A continuous-time state-space model for rapid quality control of argos locations from animal-borne tags

ID Jonsen, TA Patterson, DP Costa, PD Doherty… - Movement Ecology, 2020 - Springer
Background State-space models are important tools for quality control and analysis of error-
prone animal movement data. The near real-time (within 24 h) capability of the Argos …

Liberating Lévy walk research from the shackles of optimal foraging

A Reynolds - Physics of life reviews, 2015 - Elsevier
There is now compelling evidence that many organisms have movement patterns that can
be described as Lévy walks, or Lévy flights. Lévy movement patterns have been identified in …

Defining an epidemiological landscape that connects movement ecology to pathogen transmission and pace‐of‐life

K Manlove, M Wilber, L White… - Ecology …, 2022 - Wiley Online Library
Pathogen transmission depends on host density, mobility and contact. These components
emerge from host and pathogen movements that themselves arise through interactions with …