Information retrieval and text mining technologies for chemistry
Efficient access to chemical information contained in scientific literature, patents, technical
reports, or the web is a pressing need shared by researchers and patent attorneys from …
reports, or the web is a pressing need shared by researchers and patent attorneys from …
Chemical space and biology.
CM Dobson - Nature, 2004 - nature.com
Chemical space—which encompasses all possible small organic molecules, including those
present in biological systems—is vast. So vast, in fact, that so far only a tiny fraction of it has …
present in biological systems—is vast. So vast, in fact, that so far only a tiny fraction of it has …
Extraction of chemical structures and reactions from the literature
DM Lowe - 2012 - repository.cam.ac.uk
The ever increasing quantity of chemical literature necessitates the creation of automated
techniques for extracting relevant information. This work focuses on two aspects: the …
techniques for extracting relevant information. This work focuses on two aspects: the …
Chemical name to structure: OPSIN, an open source solution
We have produced an open source, freely available, algorithm (Open Parser for Systematic
IUPAC Nomenclature, OPSIN) that interprets the majority of organic chemical nomenclature …
IUPAC Nomenclature, OPSIN) that interprets the majority of organic chemical nomenclature …
High-throughput identification of chemistry in life science texts
P Corbett, P Murray-Rust - International Symposium on Computational Life …, 2006 - Springer
OSCAR3 is an open extensible system for the automated annotation of chemistry in scientific
articles, which can process thousands of articles per hour. This XML annotation supports …
articles, which can process thousands of articles per hour. This XML annotation supports …
[HTML][HTML] Mining metabolites: extracting the yeast metabolome from the literature
Text mining methods have added considerably to our capacity to extract biological
knowledge from the literature. Recently the field of systems biology has begun to model and …
knowledge from the literature. Recently the field of systems biology has begun to model and …
Web service infrastructure for chemoinformatics
The vast increase of pertinent information available to drug discovery scientists means that
there is a strong demand for tools and techniques for organizing and intelligently mining this …
there is a strong demand for tools and techniques for organizing and intelligently mining this …
Academic librarians at play in the field of cheminformatics: building the case for chemistry research data management
L McEwen, Y Li - Journal of computer-aided molecular design, 2014 - Springer
There are compelling needs from a variety of camps for more chemistry data to be available.
While there are funder and government mandates for depositing research data in the United …
While there are funder and government mandates for depositing research data in the United …
SemanticEye: a semantic web application to rationalize and enhance chemical electronic publishing
O Casher, HS Rzepa - Journal of chemical information and …, 2006 - ACS Publications
SemanticEye, an ontology with associated tools, improves the classification and open
accessibility of chemical information in electronic publishing. In a manner analogous to …
accessibility of chemical information in electronic publishing. In a manner analogous to …
[HTML][HTML] Communication and re-use of chemical information in bioscience
P Murray-Rust, JBO Mitchell, HS Rzepa - Bmc Bioinformatics, 2005 - Springer
The current methods of publishing chemical information in bioscience articles are analysed.
Using 3 papers as use-cases, it is shown that conventional methods using human …
Using 3 papers as use-cases, it is shown that conventional methods using human …