Host biology, ecology and the environment influence microbial biomass and diversity in 101 marine fish species

JJ Minich, A Härer, J Vechinski, BW Frable… - Nature …, 2022 - nature.com
Fish are the most diverse and widely distributed vertebrates, yet little is known about the
microbial ecology of fishes nor the biological and environmental factors that influence fish …

Bugs as features (part 2): a perspective on enriching microbiome–gut–brain axis analyses

TFS Bastiaanssen, TP Quinn, A Loughman - Nature Mental Health, 2023 - nature.com
The microbiome–gut–brain axis field is multidisciplinary, benefiting from the expertise of
microbiology, ecology, psychiatry, computational biology, and epidemiology among other …

Rarefaction is currently the best approach to control for uneven sequencing effort in amplicon sequence analyses

PD Schloss - Msphere, 2024 - Am Soc Microbiol
Considering it is common to find as much as 100-fold variation in the number of 16S rRNA
gene sequences across samples in a study, researchers need to control for the effect of …

Detection of intestinal dysbiosis in post-COVID-19 patients one to eight months after acute disease resolution

AS Ferreira-Junior, TF Borgonovi, LVV De Salis… - International Journal of …, 2022 - mdpi.com
The intestinal microbiota plays an important role in the immune response against viral
infections, modulating both innate and adaptive immune responses. The cytokine storm is …

SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment

C Marotz, P Belda-Ferre, F Ali, P Das, S Huang… - Microbiome, 2021 - Springer
Background SARS-CoV-2 is an RNA virus responsible for the coronavirus disease 2019
(COVID-19) pandemic. Viruses exist in complex microbial environments, and recent studies …

Sampling the fish gill microbiome: a comparison of tissue biopsies and swabs

M Clinton, AJ Wyness, SAM Martin, AS Brierley… - BMC microbiology, 2021 - Springer
Background Understanding the influence of methodology on results is an essential
consideration in experimental design. In the expanding field of fish microbiology, many best …

Inorganic nanoparticles: An effective antibiofilm strategy

SN Tanwar, YR Parauha, Y There, F Ameen… - …, 2024 - Wiley Online Library
Biofilm is a common problem associated with human health. Pathogenicity and increase in
resistance of bacteria require urgent development of effective ways for the treatment of …

A large-scale metagenomic survey dataset of the post-weaning piglet gut lumen

D Gaio, MZ DeMaere, K Anantanawat, GJ Eamens… - …, 2021 - academic.oup.com
Background Early weaning and intensive farming practices predispose piglets to the
development of infectious and often lethal diseases, against which antibiotics are used …

Healthcare-associated infections-related bacteriome and antimicrobial resistance profiling: assessing contamination hotspots in a developing country public hospital

AFR Sereia, AP Christoff, GNF Cruz… - Frontiers in …, 2021 - frontiersin.org
Hospital-built environment colonization by healthcare-associated infections-related bacteria
(HAIrB) and the interaction with their occupants have been studied to support more effective …

Comprehensive dynamics of bacterial and fungal diversity throughout concentrated chicken broth processing: Integrating culture-dependent and independent …

JTD Rodrigues, LP Margalho, AKR Pia, H Sierra… - International Journal of …, 2024 - Elsevier
This study presents comprehensive insights into the microbiological profile across all
concentrated chicken broth processing stages, utilizing a combination of amplicon …