Shaping bacterial gene expression by physiological and proteome allocation constraints
M Scott, T Hwa - Nature Reviews Microbiology, 2023 - nature.com
Networks of molecular regulators are often the primary objects of focus in the study of gene
regulation, with the machinery of protein synthesis tacitly relegated to the background …
regulation, with the machinery of protein synthesis tacitly relegated to the background …
Searching for principles of microbial physiology
Why do evolutionarily distinct microorganisms display similar physiological behaviours?
Why are transitions from high-ATP yield to low (er)-ATP yield metabolisms so widespread …
Why are transitions from high-ATP yield to low (er)-ATP yield metabolisms so widespread …
Stringent response ensures the timely adaptation of bacterial growth to nutrient downshift
M Zhu, X Dai - Nature Communications, 2023 - nature.com
Timely adaptation to nutrient downshift is crucial for bacteria to maintain fitness during feast
and famine cycle in the natural niche. However, the molecular mechanism that ensures the …
and famine cycle in the natural niche. However, the molecular mechanism that ensures the …
Cellular perception of growth rate and the mechanistic origin of bacterial growth law
C Wu, R Balakrishnan, N Braniff… - Proceedings of the …, 2022 - National Acad Sciences
Many cellular activities in bacteria are organized according to their growth rate. The notion
that ppGpp measures the cell's growth rate is well accepted in the field of bacterial …
that ppGpp measures the cell's growth rate is well accepted in the field of bacterial …
Enzyme expression kinetics by Escherichia coli during transition from rich to minimal media depends on proteome reserves
Bacterial fitness depends on adaptability to changing environments. In rich growth medium,
which is replete with amino acids, Escherichia coli primarily expresses protein synthesis …
which is replete with amino acids, Escherichia coli primarily expresses protein synthesis …
Metabolomics and Microbial Metabolism: Toward a Systematic Understanding
D Holbrook-Smith, J Trouillon… - Annual Review of …, 2023 - annualreviews.org
Over the past decades, our understanding of microbial metabolism has increased
dramatically. Metabolomics, a family of techniques that are used to measure the quantities of …
dramatically. Metabolomics, a family of techniques that are used to measure the quantities of …
Acetate is a beneficial nutrient for E. coli at low glycolytic flux
P Millard, T Gosselin‐Monplaisir… - The EMBO …, 2023 - embopress.org
Acetate, a major by‐product of glycolytic metabolism in Escherichia coli and many other
microorganisms, has long been considered a toxic waste compound that inhibits microbial …
microorganisms, has long been considered a toxic waste compound that inhibits microbial …
Repression of microbial arsenite uptake and methylation by dissolved organic carbon
Arsenic methylation is the microbe-mediated transformation of inorganic As into methylated
species, an important component of the biogeochemical arsenic cycle in rice paddies. Prior …
species, an important component of the biogeochemical arsenic cycle in rice paddies. Prior …
Proteome partitioning constraints in long-term laboratory evolution
Adaptive laboratory evolution experiments provide a controlled context in which the
dynamics of selection and adaptation can be followed in real-time at the single-nucleotide …
dynamics of selection and adaptation can be followed in real-time at the single-nucleotide …
Design of microbial catalysts for two-stage processes
Microbial catalysts must partition incoming substrate between the synthesis of biomass and
the synthesis of a desired product. Although biomass synthesis generates more catalyst and …
the synthesis of a desired product. Although biomass synthesis generates more catalyst and …