[HTML][HTML] Comparative study in zebrafish and medaka unravels the mechanisms of tissue regeneration

K Chowdhury, S Lin, SL Lai - Frontiers in Ecology and Evolution, 2022 - frontiersin.org
Tissue regeneration has been in the spotlight of research for its fascinating nature and
potential applications in human diseases. The trait of regenerative capacity occurs diversely …

[PDF][PDF] Medaka as a model for studying environmentally induced epigenetic transgenerational inheritance of phenotypes

RK Bhandari - Environmental epigenetics, 2016 - academic.oup.com
Ability of environmental stressors to induce transgenerational diseases has been
experimentally demonstrated in plants, worms, fish, and mammals, indicating that exposures …

Evolutionary conservation of embryonic DNA methylome remodelling in distantly related teleost species

SE Ross, J Vázquez-Marín, KRB Gert… - Nucleic Acids …, 2023 - academic.oup.com
Methylation of cytosines in the CG context (mCG) is the most abundant DNA modification in
vertebrates that plays crucial roles in cellular differentiation and identity. After fertilization …

[HTML][HTML] Centromere evolution and CpG methylation during vertebrate speciation

K Ichikawa, S Tomioka, Y Suzuki, R Nakamura… - Nature …, 2017 - nature.com
Centromeres and large-scale structural variants evolve and contribute to genome diversity
during vertebrate speciation. Here, we perform de novo long-read genome assembly of …

The DNA methylation landscape of stickleback reveals patterns of sex chromosome evolution and effects of environmental salinity

DCH Metzger, PM Schulte - Genome Biology and Evolution, 2018 - academic.oup.com
Epigenetic mechanisms such as DNA methylation are a key component of dosage
compensation on sex chromosomes and have been proposed as an important source of …

[HTML][HTML] Dynamics of DNA methylomes underlie oyster development

G Riviere, Y He, S Tecchio, E Crowell, M Gras… - PLoS …, 2017 - journals.plos.org
DNA methylation is a critical epigenetic regulator of development in mammals and social
insects, but its significance in development outside these groups is not understood. Here we …

[HTML][HTML] Individual recognition and the 'face inversion effect' in medaka fish (Oryzias latipes)

MY Wang, H Takeuchi - Elife, 2017 - elifesciences.org
Individual recognition (IR) is essential for maintaining various social interactions in a group,
and face recognition is one of the most specialised cognitive abilities in IR. We used both a …

CTCF looping is established during gastrulation in medaka embryos

R Nakamura, Y Motai, M Kumagai, CL Wike… - Genome …, 2021 - genome.cshlp.org
Chromatin looping plays an important role in genome regulation. However, because ChIP-
seq and loop-resolution Hi-C (DNA-DNA proximity ligation) are extremely challenging in …

Tet1 and Tet2 protect DNA methylation canyons against hypermethylation

L Wiehle, G Raddatz, T Musch… - … and cellular biology, 2016 - Taylor & Francis
DNA methylation is a dynamic epigenetic modification with an important role in cell fate
specification and reprogramming. The Ten eleven translocation (Tet) family of enzymes …

[HTML][HTML] Conserved epigenetic regulatory logic infers genes governing cell identity

WJ Shim, E Sinniah, J Xu, B Vitrinel, M Alexanian… - Cell Systems, 2020 - cell.com
Determining genes that orchestrate cell differentiation in development and disease remains
a fundamental goal of cell biology. This study establishes a genome-wide metric based on …