The case for cloud computing in genome informatics
LD Stein - Genome biology, 2010 - Springer
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Transcribed dark matter: meaning or myth?
CP Ponting, TG Belgard - Human molecular genetics, 2010 - academic.oup.com
Genomic tiling arrays, cDNA sequencing and, more recently, RNA-Seq have provided initial
insights into the extent and depth of transcribed sequence across human and other …
insights into the extent and depth of transcribed sequence across human and other …
An atlas of active enhancers across human cell types and tissues
Enhancers control the correct temporal and cell-type-specific activation of gene expression
in multicellular eukaryotes. Knowing their properties, regulatory activity and targets is crucial …
in multicellular eukaryotes. Knowing their properties, regulatory activity and targets is crucial …
Comprehensive analysis of mRNA methylation reveals enrichment in 3′ UTRs and near stop codons
Methylation of the N 6 position of adenosine (m 6 A) is a posttranscriptional modification of
RNA with poorly understood prevalence and physiological relevance. The recent discovery …
RNA with poorly understood prevalence and physiological relevance. The recent discovery …
The evolution of lncRNA repertoires and expression patterns in tetrapods
Only a very small fraction of long noncoding RNAs (lncRNAs) are well characterized. The
evolutionary history of lncRNAs can provide insights into their functionality, but the absence …
evolutionary history of lncRNAs can provide insights into their functionality, but the absence …
HRT Atlas v1. 0 database: redefining human and mouse housekeeping genes and candidate reference transcripts by mining massive RNA-seq datasets
BW Hounkpe, F Chenou, F de Lima… - Nucleic acids …, 2021 - academic.oup.com
Housekeeping (HK) genes are constitutively expressed genes that are required for the
maintenance of basic cellular functions. Despite their importance in the calibration of gene …
maintenance of basic cellular functions. Despite their importance in the calibration of gene …
[HTML][HTML] FMRP stalls ribosomal translocation on mRNAs linked to synaptic function and autism
JC Darnell, SJ Van Driesche, C Zhang, KYS Hung… - Cell, 2011 - cell.com
FMRP loss of function causes Fragile X syndrome (FXS) and autistic features. FMRP is a
polyribosome-associated neuronal RNA-binding protein, suggesting that it plays a key role …
polyribosome-associated neuronal RNA-binding protein, suggesting that it plays a key role …
[HTML][HTML] High density DNA methylation array with single CpG site resolution
M Bibikova, B Barnes, C Tsan, V Ho, B Klotzle, JM Le… - Genomics, 2011 - Elsevier
We have developed a new generation of genome-wide DNA methylation BeadChip which
allows high-throughput methylation profiling of the human genome. The new high density …
allows high-throughput methylation profiling of the human genome. The new high density …
ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
High-throughput sequencing platforms are generating massive amounts of genetic variation
data for diverse genomes, but it remains a challenge to pinpoint a small subset of …
data for diverse genomes, but it remains a challenge to pinpoint a small subset of …
The UCSC genome browser and associated tools
Abstract The UCSC Genome Browser (http://genome. ucsc. edu) is a graphical viewer for
genomic data now in its 13th year. Since the early days of the Human Genome Project, it has …
genomic data now in its 13th year. Since the early days of the Human Genome Project, it has …