Genome‐scale metabolic networks
M Terzer, ND Maynard, MW Covert… - … : Systems Biology and …, 2009 - Wiley Online Library
During the last decade, models have been developed to characterize cellular metabolism at
the level of an entire metabolic network. The main concept that underlies whole‐network …
the level of an entire metabolic network. The main concept that underlies whole‐network …
A survey of methods for deciding whether a reaction network is multistationary
Which reaction networks, when taken with mass-action kinetics, have the capacity for
multiple steady states? There is no complete answer to this question, but over the last 40 …
multiple steady states? There is no complete answer to this question, but over the last 40 …
Topological strata of weighted complex networks
The statistical mechanical approach to complex networks is the dominant paradigm in
describing natural and societal complex systems. The study of network properties, and their …
describing natural and societal complex systems. The study of network properties, and their …
Identifying parameter regions for multistationarity
Mathematical modelling has become an established tool for studying the dynamics of
biological systems. Current applications range from building models that reproduce …
biological systems. Current applications range from building models that reproduce …
The smallest chemical reaction system with bistability
T Wilhelm - BMC systems biology, 2009 - Springer
Background Bistability underlies basic biological phenomena, such as cell division,
differentiation, cancer onset, and apoptosis. So far biologists identified two necessary …
differentiation, cancer onset, and apoptosis. So far biologists identified two necessary …
State Estimation for Coupled Stochastic Complex Networks With Periodical Communication Protocol and Intermittent Nonlinearity Switching
Y Luo, Z Wang, Y Chen, X Yi - IEEE Transactions on Network …, 2021 - ieeexplore.ieee.org
In this paper, an H∞ estimation approach is given for an array of coupled stochastic
complex networks with intermittent nonlinearity switching. A set of binary random variables …
complex networks with intermittent nonlinearity switching. A set of binary random variables …
Atoms of multistationarity in chemical reaction networks
Chemical reaction systems are dynamical systems that arise in chemical engineering and
systems biology. In this work, we consider the question of whether the minimal (in a precise …
systems biology. In this work, we consider the question of whether the minimal (in a precise …
Simplifying biochemical models with intermediate species
Mathematical models are increasingly being used to understand complex biochemical
systems, to analyse experimental data and make predictions about unobserved quantities …
systems, to analyse experimental data and make predictions about unobserved quantities …
Inference of complex biological networks: distinguishability issues and optimization-based solutions
Background The inference of biological networks from high-throughput data has received
huge attention during the last decade and can be considered an important problem class in …
huge attention during the last decade and can be considered an important problem class in …
Toward design-based engineering of industrial microbes
Engineering industrial microbes has been hampered by incomplete knowledge of cell
biology. Thus an iterative engineering cycle of modeling, implementation, and analysis has …
biology. Thus an iterative engineering cycle of modeling, implementation, and analysis has …