Fragmentation pathways of protonated peptides

B Paizs, S Suhai - Mass spectrometry reviews, 2005 - Wiley Online Library
The fragmentation pathways of protonated peptides are reviewed in the present paper
paying special attention to classification of the known fragmentation channels into a simple …

Thermochemical determinations by the kinetic method

G Cooks, J Patrick, T Kotiaho, S McLuckey - Mass Spectrometry Reviews, 1994 - cris.vtt.fi
Under appropriate conditions, the kinetics of the dissociation of molecular cluster ions can
yield relative, but quantitative, thermochemical information on the constituent species …

PTM-Shepherd: analysis and summarization of post-translational and chemical modifications from open search results

DJ Geiszler, AT Kong, DM Avtonomov, F Yu… - Molecular & Cellular …, 2021 - ASBMB
Open searching has proven to be an effective strategy for identifying both known and
unknown modifications in shotgun proteomics experiments. Rather than being limited to a …

Why are B ions stable species in peptide spectra?

T Yalcin, C Khouw, IG Csizmadia… - Journal of the …, 1995 - ACS Publications
Protonated amino acids and derivatives RCH (NH2) C (+ O) X· H+ (X= OH, NH2, OCH3) do
not form stable acylium ions on loss of HX, but rather the acylium ion eliminates CO to form …

Applications and mechanisms of charge‐remote fragmentation

C Cheng, ML Gross - Mass spectrometry reviews, 2000 - Wiley Online Library
Studies on the applications, energetics, and mechanisms of charge‐remote fragmentations
are reviewed, with emphasis given to those articles published after 1992. Independent of the …

The structure and fragmentation of B n (n≥ 3) ions in peptide spectra

T Yalcin, IG Csizmadia, MR Peterson… - Journal of the American …, 1996 - Springer
The unimolecular and low energy collision-induced fragmentation reactions of the MH+ ions
of N-acetyl-tri-alanine, N-acetyl-tri-alanine methyl ester, N-acetyl-tetra-alanine, tetra-alanine …

Selective gas-phase cleavage at the peptide bond C-terminal to aspartic acid in fixed-charge derivatives of Asp-containing peptides

C Gu, G Tsaprailis, L Breci, VH Wysocki - Analytical Chemistry, 2000 - ACS Publications
This study focuses on the molecular level interpretation of the selective gas-phase cleavage
at aspartic acid residues (Asp) in protonated peptides. A ϕ3P+ CH2C (O)-group (ϕ= 2, 4, 6 …

To b or not to b: the ongoing saga of peptide b ions

AG Harrison - Mass spectrometry reviews, 2009 - Wiley Online Library
Modern soft ionization techniques readily produce protonated or multiply protonated
peptides. Collision‐induced dissociation (CID) of these protonated species is often used as …

Charge derivatization of peptides for analysis by mass spectrometry

KDW Roth, ZH Huang, N Sadagopan… - Mass spectrometry …, 1998 - Wiley Online Library
The analysis of peptide derivatives by fast atom bombardment, liquid secondary‐ionization
mass spectrometry, plasma desorption, electrospray ionization, and matrix‐assisted laser …

Intramolecular migration of amide hydrogens in protonated peptides upon collisional activation

TJD Jørgensen, H Gårdsvoll, M Ploug… - Journal of the …, 2005 - ACS Publications
Presently different opinions exist as to the degree of scrambling of amide hydrogens in
gaseous protonated peptides and proteins upon collisional activation in tandem mass …