A comprehensive overview of cotton genomics, biotechnology and molecular biological studies

X Wen, Z Chen, Z Yang, M Wang, S Jin, G Wang… - Science China Life …, 2023 - Springer
Cotton is an irreplaceable economic crop currently domesticated in the human world for its
extremely elongated fiber cells specialized in seed epidermis, which makes it of high …

Recent progression and future perspectives in cotton genomic breeding

Z Yang, C Gao, Y Zhang, Q Yan, W Hu… - Journal of Integrative …, 2023 - Wiley Online Library
Upland cotton is an important global cash crop for its long seed fibers and high edible oil
and protein content. Progress in cotton genomics promotes the advancement of cotton …

Genomic innovation and regulatory rewiring during evolution of the cotton genus Gossypium

M Wang, J Li, Z Qi, Y Long, L Pei, X Huang… - Nature Genetics, 2022 - nature.com
Phenotypic diversity and evolutionary innovation ultimately trace to variation in genomic
sequence and rewiring of regulatory networks. Here, we constructed a pan-genome of the …

CottonGen: the community database for cotton genomics, genetics, and breeding research

J Yu, S Jung, CH Cheng, T Lee, P Zheng, K Buble… - Plants, 2021 - mdpi.com
Over the last eight years, the volume of whole genome, gene expression, SNP genotyping,
and phenotype data generated by the cotton research community has exponentially …

The 3D architecture of the pepper genome and its relationship to function and evolution

Y Liao, J Wang, Z Zhu, Y Liu, J Chen, Y Zhou… - Nature …, 2022 - nature.com
The organization of chromatin into self-interacting domains is universal among eukaryotic
genomes, though how and why they form varies considerably. Here we report a …

A telomere-to-telomere cotton genome assembly reveals centromere evolution and a Mutator transposon-linked module regulating embryo development

G Huang, Z Bao, L Feng, J Zhai, JF Wendel, X Cao… - Nature Genetics, 2024 - nature.com
Assembly of complete genomes can reveal functional genetic elements missing from draft
sequences. Here we present the near-complete telomere-to-telomere and contiguous …

Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation

L Pei, X Huang, Z Liu, X Tian, J You, J Li, DD Fang… - Genome biology, 2022 - Springer
Background Despite remarkable advances in our knowledge of epigenetically mediated
transcriptional programming of cell differentiation in plants, little is known about chromatin …

High-quality Gossypium hirsutum and Gossypium barbadense genome assemblies reveal the landscape and evolution of centromeres

X Chang, X He, J Li, Z Liu, R Pi, X Luo, R Wang… - Plant …, 2024 - cell.com
Centromere positioning and organization are crucial for genome evolution; however,
research on centromere biology is largely influenced by the quality of available genome …

Chromosome-level baobab genome illuminates its evolutionary trajectory and environmental adaptation

JK Kitony, K Colt, BW Abramson, NT Hartwick… - Nature …, 2024 - nature.com
Baobab (Adansonia digitata) is a long-lived tree endemic to Africa with economic,
ecological, and cultural importance, yet its genomic features are underexplored. Here, we …

Cotton pedigree genome reveals restriction of cultivar-driven strategy in cotton breeding

S Liu, D Zuo, H Cheng, M He, Q Wang, L Lv, Y Zhang… - Genome Biology, 2023 - Springer
Background Many elite genes have been identified from the available cotton genomic data,
providing various genetic resources for gene-driven breeding. However, backbone cultivar …