Conformational dynamics of asparagine at coiled-coil interfaces
F Thomas, A Niitsu, A Oregioni, GJ Bartlett… - Biochemistry, 2017 - ACS Publications
Coiled coils (CCs) are among the best-understood protein folds. Nonetheless, there are
gaps in our knowledge of CCs. Notably, CCs are likely to be structurally more dynamic than …
gaps in our knowledge of CCs. Notably, CCs are likely to be structurally more dynamic than …
Relationship between intramolecular hydrogen bonding and solvent accessibility of side‐chain donors and acceptors in proteins
AV Efimov, EV Brazhnikov - FEBS letters, 2003 - Wiley Online Library
This study shows that intramolecular hydrogen bonding in proteins depends on the
accessibility of donors and acceptors to water molecules. The frequency of occurrence of H …
accessibility of donors and acceptors to water molecules. The frequency of occurrence of H …
Asp79 makes a large, unfavorable contribution to the stability of RNase Sa
SR Trevino, K Gokulan, S Newsom, RL Thurlkill… - Journal of molecular …, 2005 - Elsevier
The two most buried carboxyl groups in ribonuclease Sa (RNase Sa) are Asp33 (99%
buried; pK 2.4) and Asp79 (85% buried; pK 7.4). Above these pK values, the stability of the …
buried; pK 2.4) and Asp79 (85% buried; pK 7.4). Above these pK values, the stability of the …
The Effect of Electrostatic Interactions on the Folding Kinetics of a 3-α-Helical Bundle Protein Family
The trio of protein segment repeats called spectrins diverges by more than 2 orders of
magnitude in their folding and unfolding rates, despite having very similar stabilities and …
magnitude in their folding and unfolding rates, despite having very similar stabilities and …
A comparative analysis of interhelical polar interactions of various α-helix packings in proteins
AV Efimov, MS Kondratova - Molecular Biology, 2003 - Springer
One hundred twenty globular proteins and forty five “leucine zippers” representing all types
of packing of long α-helices were studied in terms of revealing and comparing their …
of packing of long α-helices were studied in terms of revealing and comparing their …
[图书][B] Understanding forces that contribute to protein stability: application for increasing protein stability
H Fu - 2009 - search.proquest.com
The aim of this study is to further our understanding of the forces that contribute to protein
stability and to investigate how site-directed mutagenesis might be used for increasing …
stability and to investigate how site-directed mutagenesis might be used for increasing …
Analysis of Interactions of Buried Polar Side Chains in β-Proteins
EV Brazhnikov, AV Efimov - Molecular Biology, 2005 - Springer
Qualitative and quantitative analysis of polar side chains inaccessible to water molecules, as
well as their interactions in 100 globular β-sheet proteins, was performed. It was shown that …
well as their interactions in 100 globular β-sheet proteins, was performed. It was shown that …
Computational design of zinc binding sites at protein interfaces and enzyme active sites
BS Der - 2013 - search.proquest.com
Engineered proteins will continue to expand the molecular toolkit for applications in
medicine, biotechnology, and basic research. While protein engineering efforts often use a" …
medicine, biotechnology, and basic research. While protein engineering efforts often use a" …
Cracking the Spectrins' Riddle
FM Yrazu - 2017 - search.proquest.com
The contrasting folding characteristics of three protein segments, each belonging to the
same three-helix bundle family, have been the subject of experimental studies for more than …
same three-helix bundle family, have been the subject of experimental studies for more than …