Klebsiella oxytoca complex: update on taxonomy, antimicrobial resistance, and virulence
J Yang, H Long, Y Hu, Y Feng… - Clinical microbiology …, 2022 - Am Soc Microbiol
Klebsiella oxytoca is actually a complex of nine species—Klebsiella grimontii, Klebsiella
huaxiensis, Klebsiella michiganensis, K. oxytoca, Klebsiella pasteurii, Klebsiella …
huaxiensis, Klebsiella michiganensis, K. oxytoca, Klebsiella pasteurii, Klebsiella …
A roadmap for genome-based phage taxonomy
Bacteriophage (phage) taxonomy has been in flux since its inception over four decades ago.
Genome sequencing has put pressure on the classification system and recent years have …
Genome sequencing has put pressure on the classification system and recent years have …
Producing polished prokaryotic pangenomes with the Panaroo pipeline
Population-level comparisons of prokaryotic genomes must take into account the substantial
differences in gene content resulting from horizontal gene transfer, gene duplication and …
differences in gene content resulting from horizontal gene transfer, gene duplication and …
Histamine production by the gut microbiota induces visceral hyperalgesia through histamine 4 receptor signaling in mice
The gut microbiota has been implicated in chronic pain disorders, including irritable bowel
syndrome (IBS), yet specific pathophysiological mechanisms remain unclear. We showed …
syndrome (IBS), yet specific pathophysiological mechanisms remain unclear. We showed …
Genome evolution and the emergence of pathogenicity in avian Escherichia coli
Chickens are the most common birds on Earth and colibacillosis is among the most common
diseases affecting them. This major threat to animal welfare and safe sustainable food …
diseases affecting them. This major threat to animal welfare and safe sustainable food …
Multiclonal human origin and global expansion of an endemic bacterial pathogen of livestock
Most new pathogens of humans and animals arise via switching events from distinct host
species. However, our understanding of the evolutionary and ecological drivers of …
species. However, our understanding of the evolutionary and ecological drivers of …
The pan-genome of Aspergillus fumigatus provides a high-resolution view of its population structure revealing high levels of lineage-specific diversity driven by …
Aspergillus fumigatus is a deadly agent of human fungal disease where virulence
heterogeneity is thought to be at least partially structured by genetic variation between …
heterogeneity is thought to be at least partially structured by genetic variation between …
Challenges in prokaryote pangenomics
Horizontal gene transfer (HGT) and the resulting patterns of gene gain and loss are a
fundamental part of bacterial evolution. Investigating these patterns can help us to …
fundamental part of bacterial evolution. Investigating these patterns can help us to …
Skin dysbiosis and Cutibacterium acnes biofilm in inflammatory acne lesions of adolescents
Acne vulgaris is a common inflammatory disorder affecting more than 80% of young
adolescents. Cutibacterium acnes plays a role in the pathogenesis of acne lesions, although …
adolescents. Cutibacterium acnes plays a role in the pathogenesis of acne lesions, although …
Meta-analysis of the Ralstonia solanacearum species complex (RSSC) based on comparative evolutionary genomics and reverse ecology
Ralstonia solanacearum species complex (RSSC) strains are bacteria that colonize plant
xylem tissue and cause vascular wilt diseases. However, individual strains vary in host …
xylem tissue and cause vascular wilt diseases. However, individual strains vary in host …