Graph representation learning in bioinformatics: trends, methods and applications

HC Yi, ZH You, DS Huang… - Briefings in …, 2022 - academic.oup.com
Graph is a natural data structure for describing complex systems, which contains a set of
objects and relationships. Ubiquitous real-life biomedical problems can be modeled as …

A comprehensive survey of graph embedding: Problems, techniques, and applications

H Cai, VW Zheng, KCC Chang - IEEE transactions on …, 2018 - ieeexplore.ieee.org
Graph is an important data representation which appears in a wide diversity of real-world
scenarios. Effective graph analytics provides users a deeper understanding of what is …

Graph neural networks: foundation, frontiers and applications

L Wu, P Cui, J Pei, L Zhao, X Guo - … of the 28th ACM SIGKDD Conference …, 2022 - dl.acm.org
The field of graph neural networks (GNNs) has seen rapid and incredible strides over the
recent years. Graph neural networks, also known as deep learning on graphs, graph …

Graph contrastive learning with augmentations

Y You, T Chen, Y Sui, T Chen… - Advances in neural …, 2020 - proceedings.neurips.cc
Generalizable, transferrable, and robust representation learning on graph-structured data
remains a challenge for current graph neural networks (GNNs). Unlike what has been …

Graph learning: A survey

F Xia, K Sun, S Yu, A Aziz, L Wan… - IEEE Transactions on …, 2021 - ieeexplore.ieee.org
Graphs are widely used as a popular representation of the network structure of connected
data. Graph data can be found in a broad spectrum of application domains such as social …

Self-supervised learning: Generative or contrastive

X Liu, F Zhang, Z Hou, L Mian, Z Wang… - IEEE transactions on …, 2021 - ieeexplore.ieee.org
Deep supervised learning has achieved great success in the last decade. However, its
defects of heavy dependence on manual labels and vulnerability to attacks have driven …

Contrastive multi-view representation learning on graphs

K Hassani, AH Khasahmadi - International conference on …, 2020 - proceedings.mlr.press
We introduce a self-supervised approach for learning node and graph level representations
by contrasting structural views of graphs. We show that unlike visual representation learning …

Gcc: Graph contrastive coding for graph neural network pre-training

J Qiu, Q Chen, Y Dong, J Zhang, H Yang… - Proceedings of the 26th …, 2020 - dl.acm.org
Graph representation learning has emerged as a powerful technique for addressing real-
world problems. Various downstream graph learning tasks have benefited from its recent …

Deep graph contrastive representation learning

Y Zhu, Y Xu, F Yu, Q Liu, S Wu, L Wang - arXiv preprint arXiv:2006.04131, 2020 - arxiv.org
Graph representation learning nowadays becomes fundamental in analyzing graph-
structured data. Inspired by recent success of contrastive methods, in this paper, we propose …

Geom-gcn: Geometric graph convolutional networks

H Pei, B Wei, KCC Chang, Y Lei, B Yang - arXiv preprint arXiv:2002.05287, 2020 - arxiv.org
Message-passing neural networks (MPNNs) have been successfully applied to
representation learning on graphs in a variety of real-world applications. However, two …