Origins of DNA replication in eukaryotes

Y Hu, B Stillman - Molecular cell, 2023 - cell.com
Errors occurring during DNA replication can result in inaccurate replication, incomplete
replication, or re-replication, resulting in genome instability that can lead to diseases such as …

Control of DNA replication timing in the 3D genome

C Marchal, J Sima, DM Gilbert - Nature Reviews Molecular Cell Biology, 2019 - nature.com
The 3D organization of mammalian chromatin was described more than 30 years ago by
visualizing sites of DNA synthesis at different times during the S phase of the cell cycle …

[HTML][HTML] Transcription-replication conflict orientation modulates R-loop levels and activates distinct DNA damage responses

S Hamperl, MJ Bocek, JC Saldivar, T Swigut… - Cell, 2017 - cell.com
Conflicts between transcription and replication are a potent source of DNA damage. Co-
transcriptional R-loops could aggravate such conflicts by creating an additional barrier to …

Non-coding genetic variants in human disease

F Zhang, JR Lupski - Human molecular genetics, 2015 - academic.oup.com
Genetic variants, including single-nucleotide variants (SNVs) and copy number variants
(CNVs), in the non-coding regions of the human genome can play an important role in …

DNA replication origin activation in space and time

M Fragkos, O Ganier, P Coulombe… - Nature reviews Molecular …, 2015 - nature.com
DNA replication begins with the assembly of pre-replication complexes (pre-RCs) at
thousands of DNA replication origins during the G1 phase of the cell cycle. At the G1–S …

Single-cell whole-genome analyses by Linear Amplification via Transposon Insertion (LIANTI)

C Chen, D Xing, L Tan, H Li, G Zhou, L Huang, XS Xie - Science, 2017 - science.org
Single-cell genomics is important for biology and medicine. However, current whole-
genome amplification (WGA) methods are limited by low accuracy of copy-number variation …

[HTML][HTML] Mutational strand asymmetries in cancer genomes reveal mechanisms of DNA damage and repair

NJ Haradhvala, P Polak, P Stojanov, KR Covington… - Cell, 2016 - cell.com
Mutational processes constantly shape the somatic genome, leading to immunity, aging,
cancer, and other diseases. When cancer is the outcome, we are afforded a glimpse into …

[HTML][HTML] Integrative detection and analysis of structural variation in cancer genomes

JR Dixon, J Xu, V Dileep, Y Zhan, F Song, VT Le… - Nature …, 2018 - nature.com
Structural variants (SVs) can contribute to oncogenesis through a variety of mechanisms.
Despite their importance, the identification of SVs in cancer genomes remains challenging …

Hypermutation in human cancer genomes: footprints and mechanisms

SA Roberts, DA Gordenin - Nature Reviews Cancer, 2014 - nature.com
A role for somatic mutations in carcinogenesis is well accepted, but the degree to which
mutation rates influence cancer initiation and development is under continuous debate …

Distinct but concerted roles of ATR, DNA-PK, and Chk1 in countering replication stress during S phase

R Buisson, JL Boisvert, CH Benes, L Zou - Molecular cell, 2015 - cell.com
The ATR-Chk1 pathway is critical for DNA damage responses and cell-cycle progression.
Chk1 inhibition is more deleterious to cycling cells than ATR inhibition, raising questions …