Deep learning as a tool for ecology and evolution
Deep learning is driving recent advances behind many everyday technologies, including
speech and image recognition, natural language processing and autonomous driving. It is …
speech and image recognition, natural language processing and autonomous driving. It is …
Navigating the temporal continuum of effective population size
K Nadachowska‐Brzyska, M Konczal… - Methods in Ecology …, 2022 - Wiley Online Library
Effective population size, Ne, is a key evolutionary parameter that determines the levels of
genetic variation and efficacy of selection. Estimation and interpretation of Ne are essential …
genetic variation and efficacy of selection. Estimation and interpretation of Ne are essential …
Efficient ancestry and mutation simulation with msprime 1.0
Stochastic simulation is a key tool in population genetics, since the models involved are
often analytically intractable and simulation is usually the only way of obtaining ground-truth …
often analytically intractable and simulation is usually the only way of obtaining ground-truth …
Single-haplotype comparative genomics provides insights into lineage-specific structural variation during cat evolution
The role of structurally dynamic genomic regions in speciation is poorly understood due to
challenges inherent in diploid genome assembly. Here we reconstructed the evolutionary …
challenges inherent in diploid genome assembly. Here we reconstructed the evolutionary …
[HTML][HTML] A community-maintained standard library of population genetic models
The explosion in population genomic data demands ever more complex modes of analysis,
and increasingly, these analyses depend on sophisticated simulations. Recent advances in …
and increasingly, these analyses depend on sophisticated simulations. Recent advances in …
Harnessing deep learning for population genetic inference
X Huang, A Rymbekova, O Dolgova, O Lao… - Nature Reviews …, 2024 - nature.com
In population genetics, the emergence of large-scale genomic data for various species and
populations has provided new opportunities to understand the evolutionary forces that drive …
populations has provided new opportunities to understand the evolutionary forces that drive …
[PDF][PDF] Deep learning in population genetics
K Korfmann, OE Gaggiotti… - Genome Biology and …, 2023 - academic.oup.com
Population genetics is transitioning into a data-driven discipline thanks to the availability of
large-scale genomic data and the need to study increasingly complex evolutionary …
large-scale genomic data and the need to study increasingly complex evolutionary …
[HTML][HTML] Detecting adaptive introgression in human evolution using convolutional neural networks
Studies in a variety of species have shown evidence for positively selected variants
introduced into a population via introgression from another, distantly related population—a …
introduced into a population via introgression from another, distantly related population—a …
An overview of current population genomics methods for the analysis of whole‐genome resequencing data in eukaryotes
YXC Bourgeois, BH Warren - Molecular Ecology, 2021 - Wiley Online Library
Characterizing the population history of a species and identifying loci underlying local
adaptation is crucial in functional ecology, evolutionary biology, conservation and …
adaptation is crucial in functional ecology, evolutionary biology, conservation and …
Artificial intelligence-assisted selection and efficacy prediction of antineoplastic strategies for precision cancer therapy
ZHE Zhang, X Wei - Seminars in Cancer Biology, 2023 - Elsevier
The rapid development of artificial intelligence (AI) technologies in the context of the vast
amount of collectable data obtained from high-throughput sequencing has led to an …
amount of collectable data obtained from high-throughput sequencing has led to an …