Bacterial vivisection: how fluorescence-based imaging techniques shed a light on the inner workings of bacteria

A Cambré, A Aertsen - Microbiology and Molecular Biology …, 2020 - Am Soc Microbiol
The rise in fluorescence-based imaging techniques over the past 3 decades has improved
the ability of researchers to scrutinize live cell biology at increased spatial and temporal …

[HTML][HTML] Understanding protein mobility in bacteria by tracking single molecules

AN Kapanidis, S Uphoff, M Stracy - Journal of Molecular Biology, 2018 - Elsevier
Protein diffusion is crucial for understanding the formation of protein complexes in vivo and
has been the subject of many fluorescence microscopy studies in cells; however, such …

[HTML][HTML] Parameter-free molecular super-structures quantification in single-molecule localization microscopy

M Marenda, E Lazarova, S van de Linde… - Journal of Cell …, 2021 - rupress.org
Understanding biological function requires the identification and characterization of complex
patterns of molecules. Single-molecule localization microscopy (SMLM) can quantitatively …

Imaging live bacteria at the nanoscale: comparison of immobilisation strategies

G Benn, ALB Pyne, MG Ryadnov, BW Hoogenboom - Analyst, 2019 - pubs.rsc.org
Atomic force microscopy (AFM) provides an effective, label-free technique enabling the
imaging of live bacteria under physiological conditions with nanometre precision. However …

From single bacterial cell imaging towards in vivo single-molecule biochemistry studies

U Endesfelder - Essays in Biochemistry, 2019 - portlandpress.com
Bacteria as single-cell organisms are important model systems to study cellular mechanisms
and functions. In recent years and with the help of advanced fluorescence microscopy …

[PDF][PDF] Extracting transition rates in particle tracking using analytical diffusion distribution analysis

JNA Vink, SJJ Brouns, J Hohlbein - Biophysical Journal, 2020 - cell.com
Single-particle tracking is an important technique in the life sciences to understand the
kinetics of biomolecules. The analysis of apparent diffusion coefficients in vivo, for example …

ColiCoords: A Python package for the analysis of bacterial fluorescence microscopy data

JH Smit, Y Li, EM Warszawik, A Herrmann, T Cordes - PloS one, 2019 - journals.plos.org
Single-molecule fluorescence microscopy studies of bacteria provide unique insights into
the mechanisms of cellular processes and protein machineries in ways that are unrivalled by …

[HTML][HTML] Combining modules for versatile and optimal labeling of lactic acid bacteria: two pMV158-family promiscuous replicons, a pneumococcal system for …

JN Garay-Novillo, D García-Morena… - Frontiers in …, 2019 - frontiersin.org
Labeling of bacterial cells with fluorescent proteins allows tracking the bacteria in
competition and interactomic in vivo and in vitro studies. During the last years, a few plasmid …

Visualizing the inner life of microbes: practices of multi-color single-molecule localization microscopy in microbiology

I Vojnovic, J Winkelmeier… - Biochemical Society …, 2019 - portlandpress.com
In this review, we discuss multi-color single-molecule imaging and tracking strategies for
studying microbial cell biology. We first summarize and compare the methods in a detailed …

Bacterial transcriptional regulators: A road map for functional, structural, and biophysical characterization

CM Pis Diez, MJ Juncos, M Villarruel Dujovne… - International Journal of …, 2022 - mdpi.com
The different niches through which bacteria move during their life cycle require a fast
response to the many environmental queues they encounter. The sensing of these stimuli …