Long-range enhancer–promoter contacts in gene expression control
S Schoenfelder, P Fraser - Nature Reviews Genetics, 2019 - nature.com
Spatiotemporal gene expression programmes are orchestrated by transcriptional
enhancers, which are key regulatory DNA elements that engage in physical contacts with …
enhancers, which are key regulatory DNA elements that engage in physical contacts with …
Enhancer RNAs are an important regulatory layer of the epigenome
V Sartorelli, SM Lauberth - Nature structural & molecular biology, 2020 - nature.com
Noncoding RNAs (ncRNAs) direct a remarkable number of diverse functions in development
and disease through their regulation of transcription, RNA processing and translation …
and disease through their regulation of transcription, RNA processing and translation …
Machine learning meets omics: applications and perspectives
The innovation of biotechnologies has allowed the accumulation of omics data at an
alarming rate, thus introducing the era of 'big data'. Extracting inherent valuable knowledge …
alarming rate, thus introducing the era of 'big data'. Extracting inherent valuable knowledge …
Enhancers as non-coding RNA transcription units: recent insights and future perspectives
Networks of regulatory enhancers dictate distinct cell identities and cellular responses to
diverse signals by instructing precise spatiotemporal patterns of gene expression. However …
diverse signals by instructing precise spatiotemporal patterns of gene expression. However …
The Mediator complex: a central integrator of transcription
BL Allen, DJ Taatjes - Nature reviews Molecular cell biology, 2015 - nature.com
Abstract The RNA polymerase II (Pol II) enzyme transcribes all protein-coding and most non-
coding RNA genes and is globally regulated by Mediator—a large, conformationally flexible …
coding RNA genes and is globally regulated by Mediator—a large, conformationally flexible …
The selection and function of cell type-specific enhancers
The human body contains several hundred cell types, all of which share the same genome.
In metazoans, much of the regulatory code that drives cell type-specific gene expression is …
In metazoans, much of the regulatory code that drives cell type-specific gene expression is …
Long noncoding RNAs in cardiovascular diseases
S Uchida, S Dimmeler - Circulation research, 2015 - Am Heart Assoc
In recent year, increasing evidence suggests that noncoding RNAs play important roles in
the regulation of tissue homeostasis and pathophysiological conditions. Besides small …
the regulation of tissue homeostasis and pathophysiological conditions. Besides small …
Genome-wide mapping and analysis of chromosome architecture
Chromosomes of eukaryotes adopt highly dynamic and complex hierarchical structures in
the nucleus. The three-dimensional (3D) organization of chromosomes profoundly affects …
the nucleus. The three-dimensional (3D) organization of chromosomes profoundly affects …
3D chromosome regulatory landscape of human pluripotent cells
In this study, we describe the 3D chromosome regulatory landscape of human naive and
primed embryonic stem cells. To devise this map, we identified transcriptional enhancers …
primed embryonic stem cells. To devise this map, we identified transcriptional enhancers …
dbSUPER: a database of super-enhancers in mouse and human genome
Super-enhancers are clusters of transcriptional enhancers that drive cell-type-specific gene
expression and are crucial to cell identity. Many disease-associated sequence variations are …
expression and are crucial to cell identity. Many disease-associated sequence variations are …