From intuition to AI: evolution of small molecule representations in drug discovery
Within drug discovery, the goal of AI scientists and cheminformaticians is to help identify
molecular starting points that will develop into safe and efficacious drugs while reducing …
molecular starting points that will develop into safe and efficacious drugs while reducing …
A knowledge-guided pre-training framework for improving molecular representation learning
Learning effective molecular feature representation to facilitate molecular property prediction
is of great significance for drug discovery. Recently, there has been a surge of interest in pre …
is of great significance for drug discovery. Recently, there has been a surge of interest in pre …
Impact of Domain Knowledge and Multi-Modality on Intelligent Molecular Property Prediction: A Systematic Survey
The precise prediction of molecular properties is essential for advancements in drug
development, particularly in virtual screening and compound optimization. The recent …
development, particularly in virtual screening and compound optimization. The recent …
GCNSA: DNA storage encoding with a graph convolutional network and self-attention
DNA Encoding, as a key step in DNA storage, plays an important role in reading and writing
accuracy and the storage error rate. However, currently, the encoding efficiency is not high …
accuracy and the storage error rate. However, currently, the encoding efficiency is not high …
Synthetic pre-training for neural-network interatomic potentials
JLA Gardner, KT Baker… - Machine Learning: Science …, 2024 - iopscience.iop.org
Abstract Machine learning (ML) based interatomic potentials have transformed the field of
atomistic materials modelling. However, ML potentials depend critically on the quality and …
atomistic materials modelling. However, ML potentials depend critically on the quality and …
Molshap: Interpreting quantitative structure–activity relationships using shapley values of r-groups
Optimizing the activities and properties of lead compounds is an essential step in the drug
discovery process. Despite recent advances in machine learning-aided drug discovery, most …
discovery process. Despite recent advances in machine learning-aided drug discovery, most …
Fast and effective molecular property prediction with transferability map
Effective transfer learning for molecular property prediction has shown considerable strength
in addressing insufficient labeled molecules. Many existing methods either disregard the …
in addressing insufficient labeled molecules. Many existing methods either disregard the …
Quantifying the hardness of bioactivity prediction tasks for transfer learning
H Fooladi, S Hirte, J Kirchmair - Journal of Chemical Information …, 2024 - ACS Publications
Today, machine learning methods are widely employed in drug discovery. However, the
chronic lack of data continues to hamper their further development, validation, and …
chronic lack of data continues to hamper their further development, validation, and …
A Review on Transferability Estimation in Deep Transfer Learning
Deep transfer learning has become increasingly prevalent in various fields such as industry
and medical science in recent years. To ensure the successful implementation of target …
and medical science in recent years. To ensure the successful implementation of target …
Advanced deep learning methods for molecular property prediction
The prediction of molecular properties is a crucial task in the field of drug discovery.
Computational methods that can accurately predict molecular properties can significantly …
Computational methods that can accurately predict molecular properties can significantly …