Mechanisms of tissue and cell-type specificity in heritable traits and diseases

I Hekselman, E Yeger-Lotem - Nature Reviews Genetics, 2020 - nature.com
Hundreds of heritable traits and diseases that are caused by germline aberrations in
ubiquitously expressed genes manifest in a remarkably limited number of cell types and …

New diagnostic approaches for undiagnosed rare genetic diseases

T Hartley, G Lemire, KD Kernohan… - Annual review of …, 2020 - annualreviews.org
Accurate diagnosis is the cornerstone of medicine; it is essential for informed care and
promoting patient and family well-being. However, families with a rare genetic disease …

[HTML][HTML] Host genetic control of gut microbiome composition

JA Bubier, EJ Chesler, GM Weinstock - Mammalian Genome, 2021 - Springer
The gut microbiome plays a significant role in health and disease, and there is mounting
evidence indicating that the microbial composition is regulated in part by host genetics …

[HTML][HTML] Analysis of transcript-deleterious variants in Mendelian disorders: implications for RNA-based diagnostics

S Maddirevula, H Kuwahara, N Ewida, HE Shamseldin… - Genome biology, 2020 - Springer
Background At least 50% of patients with suspected Mendelian disorders remain
undiagnosed after whole-exome sequencing (WES), and the extent to which non-coding …

An open resource of structural variation for medical and population genetics

RL Collins, H Brand, KJ Karczewski, X Zhao, J Alföldi… - BioRxiv, 2019 - biorxiv.org
Structural variants (SVs) rearrange the linear and three-dimensional organization of the
genome, which can have profound consequences in evolution, diversity, and disease. As …

[HTML][HTML] The genetics of monogenic intestinal epithelial disorders

SJ Babcock, D Flores-Marin, JR Thiagarajah - Human Genetics, 2023 - Springer
Monogenic intestinal epithelial disorders, also known as congenital diarrheas and
enteropathies (CoDEs), are a group of rare diseases that result from mutations in genes that …

[HTML][HTML] Transcriptional and functional consequences of alterations to MEF2C and its topological organization in neuronal models

K Mohajeri, R Yadav, E D'haene, PM Boone… - The American Journal of …, 2022 - cell.com
Point mutations and structural variants that directly disrupt the coding sequence of MEF2C
have been associated with a spectrum of neurodevelopmental disorders (NDDs). However …

Translational genomics and beyond in bipolar disorder

C Zhang, X Xiao, T Li, M Li - Molecular psychiatry, 2021 - nature.com
Genome-wide association studies (GWAS) have revealed multiple genomic loci conferring
risk of bipolar disorder (BD), providing hints for its underlying pathobiology. However, there …

Helixer–de novo Prediction of Primary Eukaryotic Gene Models Combining Deep Learning and a Hidden Markov Model

F Holst, A Bolger, C Günther, J Maß, S Triesch, F Kindel… - BioRxiv, 2023 - biorxiv.org
Gene structural annotation is a critical step in obtaining biological knowledge from genome
sequences yet remains a major challenge in genomics projects. Current de novo Hidden …

Cellular and molecular basis of proximal small intestine disorders

T Bildstein, F Charbit-Henrion, A Azabdaftari… - Nature Reviews …, 2024 - nature.com
The proximal part of the small intestine, including duodenum and jejunum, is not only
dedicated to nutrient digestion and absorption but is also a highly regulated immune site …