Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow

M Ravinet, R Faria, RK Butlin, J Galindo… - Journal of …, 2017 - academic.oup.com
Speciation, the evolution of reproductive isolation among populations, is continuous,
complex, and involves multiple, interacting barriers. Until it is complete, the effects of this …

Variation in recombination frequency and distribution across eukaryotes: patterns and processes

J Stapley, PGD Feulner… - … of the Royal …, 2017 - royalsocietypublishing.org
Recombination, the exchange of DNA between maternal and paternal chromosomes during
meiosis, is an essential feature of sexual reproduction in nearly all multicellular organisms …

Making sense of genomic islands of differentiation in light of speciation

JBW Wolf, H Ellegren - Nature Reviews Genetics, 2017 - nature.com
As populations diverge, genetic differences accumulate across the genome. Spurred by
rapid developments in sequencing technology, genome-wide population surveys of natural …

Genomic analysis reveals a cryptic pangolin species

TT Gu, H Wu, F Yang, P Gaubert… - Proceedings of the …, 2023 - National Acad Sciences
Eight extant species of pangolins are currently recognized. Recent studies found that two
mitochondrial haplotypes identified in confiscations in Hong Kong could not be assigned to …

Discovery and population genomics of structural variation in a songbird genus

MH Weissensteiner, I Bunikis, A Catalán… - Nature …, 2020 - nature.com
Structural variation (SV) constitutes an important type of genetic mutations providing the raw
material for evolution. Here, we uncover the genome-wide spectrum of intra-and interspecific …

Evolution and diversity of transposable elements in vertebrate genomes

CG Sotero-Caio, RN Platt, A Suh… - Genome biology and …, 2017 - academic.oup.com
Transposable elements (TEs) are selfish genetic elements that mobilize in genomes via
transposition or retrotransposition and often make up large fractions of vertebrate genomes …

A fast, reproducible, high-throughput variant calling workflow for population genomics

CD Mirchandani, AJ Shultz… - Molecular Biology …, 2024 - academic.oup.com
The increasing availability of genomic resequencing data sets and high-quality reference
genomes across the tree of life present exciting opportunities for comparative population …

From molecules to populations: appreciating and estimating recombination rate variation

JV Peñalba, JBW Wolf - Nature Reviews Genetics, 2020 - nature.com
Recombination is a central biological process with implications for many areas in the life
sciences. Yet we are only beginning to appreciate variation in the recombination rate along …

Repeated divergent selection on pigmentation genes in a rapid finch radiation

L Campagna, M Repenning, LF Silveira… - Science …, 2017 - science.org
Instances of recent and rapid speciation are suitable for associating phenotypes with their
causal genotypes, especially if gene flow homogenizes areas of the genome that are not …

Genetics and the evolution of prezygotic isolation

RM Merrill, H Arenas-Castro… - Cold Spring …, 2024 - cshperspectives.cshlp.org
The significance of prezygotic isolation for speciation has been recognized at least since the
Modern Synthesis. However, fundamental questions remain. For example, how are genetic …