What are higher-order networks?

C Bick, E Gross, HA Harrington, MT Schaub - SIAM Review, 2023 - SIAM
Network-based modeling of complex systems and data using the language of graphs has
become an essential topic across a range of different disciplines. Arguably, this graph-based …

A state-of-the-art review of experimental and computational studies of granular materials: properties, advances, challenges, and future directions

P Tahmasebi - Progress in Materials Science, 2023 - Elsevier
Modeling of heterogeneous materials and media is a problem of fundamental importance to
a wide class of phenomena and systems, ranging from condensed matter physics, soft …

Persistent-homology-based machine learning: a survey and a comparative study

CS Pun, SX Lee, K Xia - Artificial Intelligence Review, 2022 - Springer
A suitable feature representation that can both preserve the data intrinsic information and
reduce data complexity and dimensionality is key to the performance of machine learning …

Porous media characterization using Minkowski functionals: Theories, applications and future directions

RT Armstrong, JE McClure, V Robins, Z Liu… - Transport in Porous …, 2019 - Springer
An elementary question in porous media research is in regard to the relationship between
structure and function. In most fields, the porosity and permeability of porous media are …

Persistent homology analysis for materials research and persistent homology software: HomCloud

I Obayashi, T Nakamura, Y Hiraoka - journal of the physical society of …, 2022 - journals.jps.jp
This paper introduces persistent homology, which is a powerful tool to characterize the
shape of data using the mathematical concept of topology. We explain the fundamental idea …

Topological feature engineering for machine learning based halide perovskite materials design

DV Anand, Q Xu, JJ Wee, K Xia, TC Sum - npj Computational Materials, 2022 - nature.com
Accelerated materials development with machine learning (ML) assisted screening and high
throughput experimentation for new photovoltaic materials holds the key to addressing our …

Stable vectorization of multiparameter persistent homology using signed barcodes as measures

D Loiseaux, L Scoccola, M Carrière… - Advances in …, 2024 - proceedings.neurips.cc
Persistent homology (PH) provides topological descriptors for geometric data, such as
weighted graphs, which are interpretable, stable to perturbations, and invariant under, eg …

[HTML][HTML] Pattern detection in colloidal assembly: A mosaic of analysis techniques

V Lotito, T Zambelli - Advances in colloid and interface science, 2020 - Elsevier
Abstract Characterization of the morphology, identification of patterns and quantification of
order encountered in colloidal assemblies is essential for several reasons. First of all, it is …

Weighted persistent homology for osmolyte molecular aggregation and hydrogen-bonding network analysis

DV Anand, Z Meng, K Xia, Y Mu - Scientific reports, 2020 - nature.com
It has long been observed that trimethylamine N-oxide (TMAO) and urea demonstrate
dramatically different properties in a protein folding process. Even with the enormous …

Limit theorems for persistence diagrams

Y Hiraoka, T Shirai, KD Trinh - The Annals of Applied Probability, 2018 - JSTOR
The persistent homology of a stationary point process on RN is studied in this paper. As a
generalization of continuum percolation theory, we study higher dimensional topological …