Unraveling aging from transcriptomics

Y Huang, S Zhu, S Yao, H Zhai, C Liu, JDJ Han - Trends in Genetics, 2024 - cell.com
Research into aging constitutes a pivotal endeavor aimed at elucidating the underlying
biological mechanisms governing aging and age-associated diseases, as well as promoting …

A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex

LA Huuki-Myers, A Spangler, NJ Eagles… - Science, 2024 - science.org
The molecular organization of the human neocortex historically has been studied in the
context of its histological layers. However, emerging spatial transcriptomic technologies …

Omics approaches to investigate the pathogenesis of suicide

M Boldrini, Y Xiao, T Sing, C Zhu, M Jabbi… - Biological …, 2024 - Elsevier
Suicide is the second leading cause of death in US adolescents and young adults, and
generally associated with a psychiatric disorder. Suicidal behavior has a complex etiology …

Private information leakage from single-cell count matrices

CR Walker, X Li, M Chakravarthy, W Lounsbery-Scaife… - Cell, 2024 - cell.com
The increase in publicly available human single-cell datasets, encompassing millions of
cells from many donors, has significantly enhanced our understanding of complex biological …

Comparative single‐cell transcriptomic analysis across tissues of aging primates reveals specific autologous activation of ZNF281 to mitigate oxidative stress in …

Y Xiao, X Chen, Z Chen, W Dai, X Hu, S Zhang… - Aging …, 2024 - Wiley Online Library
Reactive oxygen species (ROS) and oxidative stress accelerate cellular aging, but their
impact on different tissues varies. The cornea, known for its robust antioxidant defense …

iMIRACLE: An Iterative Multi-View Graph Neural Network to Model Intercellular Gene Regulation From Spatial Transcriptomic Data

Z Duan, S Xu, C Lee, D Riffle, J Zhang - Proceedings of the 33rd ACM …, 2024 - dl.acm.org
Spatial transcriptomics has transformed genomic research by measuring spatially resolved
gene expressions, allowing us to investigate how cells adapt to their microenvironment via …

Mapping the brain's gene-regulatory maze

G Novarino, C Bock - Science, 2024 - science.org
Genetic research has contributed greatly to the molecular diagnostics of
neurodevelopmental and neuropsychiatric disorders. Nevertheless, the precise molecular …

单细胞精度的表达数量性状位点研究进展

徐晓鹏, 范小英 - 遗传, 2024 - chinagene.cn
单细胞精度的表达数量性状位点研究进展 Page 1 Hereditas (Beijing) www.chinagene.cn 收稿
日期: 2024-06-05; 修回日期: 2024-08-30; 网络发布日期:2024-09-13 基金项目: 国家自然科学 …

Oxygen-induced stress reveals context-specific gene regulatory effects in human brain organoids

BD Umans, Y Gilad - bioRxiv, 2024 - biorxiv.org
The interaction between genetic variants and environmental stressors is key to
understanding the mechanisms underlying neurological diseases. In this study, we used …

Single Cell Transcriptome Defines Cell Type Repertoire of Adult Daphnia magna.

I Krishnan, LY Yampolsky, K Petrova, L Peshkin - bioRxiv, 2024 - biorxiv.org
Detailed knowledge of transcriptional responses to environmental and developmental cues
is impossible without single cell (SC) resolution data. We performed two SC RNAseq …