Marine actinomycetes, new sources of biotechnological products

SV Jagannathan, EM Manemann, SE Rowe… - Marine Drugs, 2021 - mdpi.com
The Actinomycetales order is one of great genetic and functional diversity, including diversity
in the production of secondary metabolites which have uses in medical, environmental …

Probing the mobilome: discoveries in the dynamic microbiome

VR Carr, A Shkoporov, C Hill, P Mullany… - Trends in Microbiology, 2021 - cell.com
There has been an explosion of metagenomic data representing human, animal, and
environmental microbiomes. This provides an unprecedented opportunity for comparative …

Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria

SM Neuenschwander, R Ghai, J Pernthaler… - The ISME …, 2018 - academic.oup.com
Actinobacteria of the acI lineage are the most abundant microbes in freshwater systems, but
there are so far no pure living cultures of these organisms, possibly because of metabolic …

High-resolution metagenomic reconstruction of the freshwater spring bloom

VS Kavagutti, PA Bulzu, CM Chiriac, MM Salcher… - Microbiome, 2023 - Springer
Background The phytoplankton spring bloom in freshwater habitats is a complex, recurring,
and dynamic ecological spectacle that unfolds at multiple biological scales. Although …

Diversity and distribution of viruses inhabiting the deepest ocean on Earth

H Jian, Y Yi, J Wang, Y Hao, M Zhang, S Wang… - The ISME …, 2021 - academic.oup.com
As the most abundant biological entities on the planet, viruses significantly influence the
overall functioning of marine ecosystems. The abundance, distribution, and biodiversity of …

Phage-centric ecological interactions in aquatic ecosystems revealed through ultra-deep metagenomics

VS Kavagutti, AŞ Andrei, M Mehrshad, MM Salcher… - Microbiome, 2019 - Springer
The persistent inertia in the ability to culture environmentally abundant microbes from
aquatic ecosystems represents an obstacle in disentangling the complex web of ecological …

New viral biogeochemical roles revealed through metagenomic analysis of Lake Baikal

FH Coutinho, PJ Cabello-Yeves, R Gonzalez-Serrano… - Microbiome, 2020 - Springer
Abstract Background Lake Baikal is the largest body of liquid freshwater on Earth. Previous
studies have described the microbial composition of this habitat, but the viral communities …

Comparative genomic analysis of five freshwater cyanophages and reference-guided metagenomic data mining

K Du, F Yang, JT Zhang, RC Yu, Z Deng, WF Li… - Microbiome, 2022 - Springer
Background As important producers using photosynthesis on Earth, cyanobacteria
contribute to the oxygenation of atmosphere and the primary production of biosphere …

Mining, analyzing, and integrating viral signals from metagenomic data

T Zheng, J Li, Y Ni, K Kang, MA Misiakou, L Imamovic… - Microbiome, 2019 - Springer
Background Viruses are important components of microbial communities modulating
community structure and function; however, only a couple of tools are currently available for …

Extraordinary diversity of viruses in deep‐sea sediments as revealed by metagenomics without prior virion separation

X Zheng, W Liu, X Dai, Y Zhu, J Wang… - Environmental …, 2021 - Wiley Online Library
Our current knowledge of the virosphere in deep‐sea sediments remains rudimentary. Here
we investigated viral diversity at both gene and genomic levels in deep‐sea sediments of …