[HTML][HTML] Integrating immunopeptidome analysis for the design and development of cancer vaccines

S Feola, J Chiaro, V Cerullo - Seminars in immunology, 2023 - Elsevier
The repertoire of naturally presented peptides within the MHC (major histocompatibility
complex) or HLA (human leukocyte antigens) system on the cellular surface of every …

HCCDB: a database of hepatocellular carcinoma expression atlas

Q Lian, S Wang, G Zhang, D Wang… - Genomics …, 2018 - academic.oup.com
Hepatocellular carcinoma (HCC) is highly heterogeneous in nature and has been one of the
most common cancer types worldwide. To ensure repeatability of identified gene expression …

Diagnosing rare diseases after the exome

L Frésard, SB Montgomery - Molecular Case …, 2018 - molecularcasestudies.cshlp.org
High-throughput sequencing has ushered in a diversity of approaches for identifying genetic
variants and understanding genome structure and function. When applied to individuals with …

Genomic profiling of childhood tumor patient-derived xenograft models to enable rational clinical trial design

JL Rokita, KS Rathi, MF Cardenas, KA Upton… - Cell reports, 2019 - cell.com
Accelerating cures for children with cancer remains an immediate challenge as a result of
extensive oncogenic heterogeneity between and within histologies, distinct molecular …

WebCSEA: web-based cell-type-specific enrichment analysis of genes

Y Dai, R Hu, A Liu, KS Cho, AM Manuel… - Nucleic acids …, 2022 - academic.oup.com
Human complex traits and common diseases show tissue-and cell-type-specificity. Recently,
single-cell RNA sequencing (scRNA-seq) technology has successfully depicted cellular …

scRNASeqDB: a database for RNA-Seq based gene expression profiles in human single cells

Y Cao, J Zhu, P Jia, Z Zhao - Genes, 2017 - mdpi.com
Single-cell RNA sequencing (scRNA-Seq) is rapidly becoming a powerful tool for high-
throughput transcriptomic analysis of cell states and dynamics at the single cell level. Both …

Landscape of cancer diagnostic biomarkers from specifically expressed genes

Y Lv, SY Lin, FF Hu, Z Ye, Q Zhang… - Briefings in …, 2020 - academic.oup.com
Although there has been great progress in cancer treatment, cancer remains a serious
health threat to humans because of the lack of biomarkers for diagnosis, especially for early …

PINA 3.0: mining cancer interactome

Y Du, M Cai, X Xing, J Ji, E Yang… - Nucleic Acids Research, 2021 - academic.oup.com
Protein–protein interactions (PPIs) are crucial to mediate biological functions, and
understanding PPIs in cancer type-specific context could help decipher the underlying …

Comprehensive palmitoyl-proteomic analysis identifies distinct protein signatures for large and small cancer-derived extracellular vesicles

J Mariscal, T Vagner, M Kim, B Zhou… - Journal of …, 2020 - Taylor & Francis
Extracellular vesicles (EVs) are membrane-enclosed particles that play an important role in
cancer progression and have emerged as a promising source of circulating biomarkers …

Prognostic significance of PD‐L1 expression on cell‐surface vimentin‐positive circulating tumor cells in gastric cancer patients

M Liu, R Wang, X Sun, Y Liu, Z Wang, J Yan… - Molecular …, 2020 - Wiley Online Library
Although circulating tumor cells (CTCs) have shown promise as potential biomarkers for
diagnostic and prognostic assessment in gastric cancer (GC), determining the predictive and …