Polysaccharide degradation by the Bacteroidetes: mechanisms and nomenclature

LS McKee, SL La Rosa, B Westereng… - Environmental …, 2021 - Wiley Online Library
The Bacteroidetes phylum is renowned for its ability to degrade a wide range of complex
carbohydrates, a trait that has enabled its dominance in many diverse environments. The …

[HTML][HTML] Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring

M Sagova-Mareckova, J Boenigk, A Bouchez… - Water research, 2021 - Elsevier
Bioindication has become an indispensable part of water quality monitoring in most
countries of the world, with the presence and abundance of bioindicator taxa, mostly …

The effect of 16S rRNA region choice on bacterial community metabarcoding results

YS Bukin, YP Galachyants, IV Morozov, SV Bukin… - Scientific data, 2019 - nature.com
In this work, we compare the resolution of V2-V3 and V3-V4 16S rRNA regions for the
purposes of estimating microbial community diversity using paired-end Illumina MiSeq …

The ecology and biogeochemistry of stream biofilms

TJ Battin, K Besemer, MM Bengtsson… - Nature Reviews …, 2016 - nature.com
Streams and rivers form dense networks, shape the Earth's surface and, in their sediments,
provide an immensely large surface area for microbial growth. Biofilms dominate microbial …

Forest microbiome: diversity, complexity and dynamics

P Baldrian - FEMS Microbiology reviews, 2017 - academic.oup.com
Globally, forests represent highly productive ecosystems that act as carbon sinks where soil
organic matter is formed from residuals after biomass decomposition as well as from …

Strengths and limitations of 16S rRNA gene amplicon sequencing in revealing temporal microbial community dynamics

R Poretsky, LM Rodriguez-R, C Luo, D Tsementzi… - PloS one, 2014 - journals.plos.org
This study explored the short-term planktonic microbial community structure and resilience
in Lake Lanier (GA, USA) while simultaneously evaluating the technical aspects of …

A genome catalogue of lake bacterial diversity and its drivers at continental scale

RE Garner, SA Kraemer, VE Onana, M Fradette… - Nature …, 2023 - nature.com
Lakes are heterogeneous ecosystems inhabited by a rich microbiome whose genomic
diversity is poorly defined. We present a continental-scale study of metagenomes …

The biogeography of abundant and rare bacterioplankton in the lakes and reservoirs of China

L Liu, J Yang, Z Yu, DM Wilkinson - The ISME journal, 2015 - academic.oup.com
Bacteria play key roles in the ecology of both aquatic and terrestrial ecosystems; however,
little is known about their diversity and biogeography, especially in the rare microbial …

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

DPR Herlemann, M Labrenz, K Jürgens… - The ISME …, 2011 - academic.oup.com
Salinity is a major factor controlling the distribution of biota in aquatic systems, and most
aquatic multicellular organisms are either adapted to life in saltwater or freshwater …

Comparison of the levels of bacterial diversity in freshwater, intertidal wetland, and marine sediments by using millions of illumina tags

Y Wang, HF Sheng, Y He, JY Wu… - Applied and …, 2012 - Am Soc Microbiol
Sediment, a special realm in aquatic environments, has high microbial diversity. While there
are numerous reports about the microbial community in marine sediment, freshwater and …