Polysaccharide degradation by the Bacteroidetes: mechanisms and nomenclature
The Bacteroidetes phylum is renowned for its ability to degrade a wide range of complex
carbohydrates, a trait that has enabled its dominance in many diverse environments. The …
carbohydrates, a trait that has enabled its dominance in many diverse environments. The …
[HTML][HTML] Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring
M Sagova-Mareckova, J Boenigk, A Bouchez… - Water research, 2021 - Elsevier
Bioindication has become an indispensable part of water quality monitoring in most
countries of the world, with the presence and abundance of bioindicator taxa, mostly …
countries of the world, with the presence and abundance of bioindicator taxa, mostly …
The effect of 16S rRNA region choice on bacterial community metabarcoding results
YS Bukin, YP Galachyants, IV Morozov, SV Bukin… - Scientific data, 2019 - nature.com
In this work, we compare the resolution of V2-V3 and V3-V4 16S rRNA regions for the
purposes of estimating microbial community diversity using paired-end Illumina MiSeq …
purposes of estimating microbial community diversity using paired-end Illumina MiSeq …
The ecology and biogeochemistry of stream biofilms
Streams and rivers form dense networks, shape the Earth's surface and, in their sediments,
provide an immensely large surface area for microbial growth. Biofilms dominate microbial …
provide an immensely large surface area for microbial growth. Biofilms dominate microbial …
Forest microbiome: diversity, complexity and dynamics
P Baldrian - FEMS Microbiology reviews, 2017 - academic.oup.com
Globally, forests represent highly productive ecosystems that act as carbon sinks where soil
organic matter is formed from residuals after biomass decomposition as well as from …
organic matter is formed from residuals after biomass decomposition as well as from …
Strengths and limitations of 16S rRNA gene amplicon sequencing in revealing temporal microbial community dynamics
This study explored the short-term planktonic microbial community structure and resilience
in Lake Lanier (GA, USA) while simultaneously evaluating the technical aspects of …
in Lake Lanier (GA, USA) while simultaneously evaluating the technical aspects of …
A genome catalogue of lake bacterial diversity and its drivers at continental scale
Lakes are heterogeneous ecosystems inhabited by a rich microbiome whose genomic
diversity is poorly defined. We present a continental-scale study of metagenomes …
diversity is poorly defined. We present a continental-scale study of metagenomes …
The biogeography of abundant and rare bacterioplankton in the lakes and reservoirs of China
L Liu, J Yang, Z Yu, DM Wilkinson - The ISME journal, 2015 - academic.oup.com
Bacteria play key roles in the ecology of both aquatic and terrestrial ecosystems; however,
little is known about their diversity and biogeography, especially in the rare microbial …
little is known about their diversity and biogeography, especially in the rare microbial …
Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea
DPR Herlemann, M Labrenz, K Jürgens… - The ISME …, 2011 - academic.oup.com
Salinity is a major factor controlling the distribution of biota in aquatic systems, and most
aquatic multicellular organisms are either adapted to life in saltwater or freshwater …
aquatic multicellular organisms are either adapted to life in saltwater or freshwater …
Comparison of the levels of bacterial diversity in freshwater, intertidal wetland, and marine sediments by using millions of illumina tags
Y Wang, HF Sheng, Y He, JY Wu… - Applied and …, 2012 - Am Soc Microbiol
Sediment, a special realm in aquatic environments, has high microbial diversity. While there
are numerous reports about the microbial community in marine sediment, freshwater and …
are numerous reports about the microbial community in marine sediment, freshwater and …