The oral microbiome: diversity, biogeography and human health
The human oral microbiota is highly diverse and has a complex ecology, comprising
bacteria, microeukaryotes, archaea and viruses. These communities have elaborate and …
bacteria, microeukaryotes, archaea and viruses. These communities have elaborate and …
[HTML][HTML] Priority effects in microbiome assembly
Advances in next-generation sequencing have enabled the widespread measurement of
microbiome composition across systems and over the course of microbiome assembly …
microbiome composition across systems and over the course of microbiome assembly …
[HTML][HTML] Metabolic exchanges are ubiquitous in natural microbial communities
Microbial communities drive global biogeochemical cycles and shape the health of plants
and animals—including humans. Their structure and function are determined by ecological …
and animals—including humans. Their structure and function are determined by ecological …
Microbial interactions for nutrient acquisition in soil: miners, scavengers, and carriers
T Cao, Y Luo, M Shi, X Tian, Y Kuzyakov - Soil Biology and Biochemistry, 2024 - Elsevier
Microbial interactions in soil are hidden, as they occur stealthily in a 'dark box'. This greatly
limits our understanding of microbial functions. Here, soil microorganisms were classified …
limits our understanding of microbial functions. Here, soil microorganisms were classified …
Proliferating active matter
The fascinating patterns of collective motion created by autonomously driven particles have
fuelled active-matter research for over two decades. So far, theoretical active-matter …
fuelled active-matter research for over two decades. So far, theoretical active-matter …
[HTML][HTML] Cautionary notes on the use of co-occurrence networks in soil ecology
M Goberna, M Verdú - Soil Biology and Biochemistry, 2022 - Elsevier
Soil ecology is witnessing exponential growth in the number of studies using co-occurrence
network analysis. Researchers reconstruct networks based on the co-occurrence of taxa or …
network analysis. Researchers reconstruct networks based on the co-occurrence of taxa or …
[HTML][HTML] Microbes to support plant health: understanding bioinoculant success in complex conditions
SWM Poppeliers, JJ Sánchez-Gil… - Current opinion in …, 2023 - Elsevier
A promising, sustainable way to enhance plant health and productivity is by leveraging
beneficial microbes. Beneficial microbes are natural soil residents with proven benefits for …
beneficial microbes. Beneficial microbes are natural soil residents with proven benefits for …
From microbiome composition to functional engineering, one step at a time
Communities of microorganisms (microbiota) are present in all habitats on Earth and are
relevant for agriculture, health, and climate. Deciphering the mechanisms that determine …
relevant for agriculture, health, and climate. Deciphering the mechanisms that determine …
DeLTA 2.0: A deep learning pipeline for quantifying single-cell spatial and temporal dynamics
Improvements in microscopy software and hardware have dramatically increased the pace
of image acquisition, making analysis a major bottleneck in generating quantitative, single …
of image acquisition, making analysis a major bottleneck in generating quantitative, single …
Extracellular metabolism sets the table for microbial cross-feeding
The transfer of nutrients between cells, or cross-feeding, is a ubiquitous feature of microbial
communities with emergent properties that influence our health and orchestrate global …
communities with emergent properties that influence our health and orchestrate global …