A summary of the inaugural WHO classification of pediatric tumors: transitioning from the optical into the molecular era

SM Pfister, M Reyes-Múgica, JKC Chan, H Hasle… - Cancer discovery, 2022 - AACR
Pediatric tumors are uncommon, yet are the leading cause of cancer-related death in
childhood. Tumor types, molecular characteristics, and pathogenesis are unique, often …

Machine learning for integrating data in biology and medicine: Principles, practice, and opportunities

M Zitnik, F Nguyen, B Wang, J Leskovec… - Information …, 2019 - Elsevier
New technologies have enabled the investigation of biology and human health at an
unprecedented scale and in multiple dimensions. These dimensions include a myriad of …

Multiomic neuropathology improves diagnostic accuracy in pediatric neuro-oncology

D Sturm, D Capper, F Andreiuolo, M Gessi… - Nature medicine, 2023 - nature.com
The large diversity of central nervous system (CNS) tumor types in children and adolescents
results in disparate patient outcomes and renders accurate diagnosis challenging. In this …

Leveraging base-pair mammalian constraint to understand genetic variation and human disease

PF Sullivan, JRS Meadows, S Gazal, BDN Phan, X Li… - Science, 2023 - science.org
Thousands of genomic regions have been associated with heritable human diseases, but
attempts to elucidate biological mechanisms are impeded by an inability to discern which …

Failure of human rhombic lip differentiation underlies medulloblastoma formation

LD Hendrikse, P Haldipur, O Saulnier, J Millman… - Nature, 2022 - nature.com
Medulloblastoma (MB) comprises a group of heterogeneous paediatric embryonal
neoplasms of the hindbrain with strong links to early development of the hindbrain 1, 2, 3, 4 …

Unified rhombic lip origins of group 3 and group 4 medulloblastoma

KS Smith, L Bihannic, BL Gudenas, P Haldipur, R Tao… - Nature, 2022 - nature.com
Medulloblastoma, a malignant childhood cerebellar tumour, segregates molecularly into
biologically distinct subgroups, suggesting that a personalized approach to therapy would …

Resolving medulloblastoma cellular architecture by single-cell genomics

V Hovestadt, KS Smith, L Bihannic, MG Filbin… - Nature, 2019 - nature.com
Medulloblastoma is a malignant childhood cerebellar tumour type that comprises distinct
molecular subgroups. Whereas genomic characteristics of these subgroups are well …

Single-cell RNA-seq reveals that glioblastoma recapitulates a normal neurodevelopmental hierarchy

CP Couturier, S Ayyadhury, PU Le, J Nadaf… - Nature …, 2020 - nature.com
Cancer stem cells are critical for cancer initiation, development, and treatment resistance.
Our understanding of these processes, and how they relate to glioblastoma heterogeneity, is …

Brain cancer stem cells: resilience through adaptive plasticity and hierarchical heterogeneity

RC Gimple, K Yang, ME Halbert, S Agnihotri… - Nature Reviews …, 2022 - nature.com
Malignant brain tumours are complex ecosystems containing neoplastic and stromal
components that generate adaptive and evolutionarily driven aberrant tissues in the central …

[HTML][HTML] Integrated multi-omics analyses in oncology: a review of machine learning methods and tools

G Nicora, F Vitali, A Dagliati, N Geifman… - Frontiers in …, 2020 - frontiersin.org
In recent years, high-throughput sequencing technologies provide unprecedented
opportunity to depict cancer samples at multiple molecular levels. The integration and …