Protein dynamics and function from solution state NMR spectroscopy

M Kovermann, P Rogne, M Wolf-Watz - Quarterly reviews of …, 2016 - cambridge.org
It is well-established that dynamics are central to protein function; their importance is
implicitly acknowledged in the principles of the Monod, Wyman and Changeux model of …

Quantitative analysis of protein–ligand interactions by NMR

A Furukawa, T Konuma, S Yanaka, K Sugase - Progress in Nuclear …, 2016 - Elsevier
Protein–ligand interactions have been commonly studied through static structures of the
protein–ligand complex. Recently, however, there has been increasing interest in …

[HTML][HTML] Ubc13: the Lys63 ubiquitin chain building machine

CD Hodge, L Spyracopoulos, JNM Glover - Oncotarget, 2016 - ncbi.nlm.nih.gov
Ubc13 is an ubiquitin E2 conjugating enzyme that participates with many different E3 ligases
to form lysine 63-linked (Lys63) ubiquitin chains that are critical to signaling in inflammatory …

[HTML][HTML] Mutations of Rad6 E2 ubiquitin-conjugating enzymes at alanine-126 in helix-3 affect ubiquitination activity and decrease enzyme stability

PK Shukla, D Sinha, AM Leng, JE Bissell… - Journal of Biological …, 2022 - ASBMB
Rad6, an E2 ubiquitin-conjugating enzyme conserved from yeast to humans, functions in
transcription, genome maintenance, and proteostasis. The contributions of many conserved …

Covalent inhibition of Ubc13 affects ubiquitin signaling and reveals active site elements important for targeting

CD Hodge, RA Edwards, CJ Markin… - ACS chemical …, 2015 - ACS Publications
Ubc13 is an E2 ubiquitin conjugating enzyme that functions in nuclear DNA damage
signaling and cytoplasmic NF-κB signaling. Here, we present the structures of complexes of …

[HTML][HTML] E2 superfamily of ubiquitin-conjugating enzymes: constitutively active or activated through phosphorylation in the catalytic cleft

I Valimberti, M Tiberti, M Lambrughi, B Sarcevic… - Scientific reports, 2015 - nature.com
Protein phosphorylation is a modification that offers a dynamic and reversible mechanism to
regulate the majority of cellular processes. Numerous diseases are associated with aberrant …

Molecular basis for K63-linked ubiquitination processes in double-strand DNA break repair: A focus on kinetics and dynamics

BL Lee, A Singh, JNM Glover, MJ Hendzel… - Journal of molecular …, 2017 - Elsevier
Cells are exposed to thousands of DNA damage events on a daily basis. This damage must
be repaired to preserve genetic information and prevent development of disease. The most …

[HTML][HTML] RYBP is a K63-ubiquitin-chain-binding protein that inhibits homologous recombination repair

MAM Ali, H Strickfaden, BL Lee, L Spyracopoulos… - Cell reports, 2018 - cell.com
Summary Ring1-YY1-binding protein (RYBP) is a member of the non-canonical polycomb
repressive complex 1 (PRC1), and like other PRC1 members, it is best described as a …

Increased precision for analysis of protein–ligand dissociation constants determined from chemical shift titrations

CJ Markin, L Spyracopoulos - Journal of biomolecular NMR, 2012 - Springer
NMR is ideally suited for the analysis of protein–protein and protein ligand interactions with
dissociation constants ranging from~ 2 μM to~ 1 mM, and with kinetics in the fast exchange …

Ubiquitin phosphorylated at Ser57 hyper-activates parkin

S George, SM Wang, Y Bi, M Treidlinger… - … et Biophysica Acta (BBA …, 2017 - Elsevier
Malfunction of the ubiquitin (Ub) E3 ligase, parkin, leads to defects in mitophagy and protein
quality control linked to Parkinson's disease. Parkin activity is stimulated by phosphorylation …